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Report for CCDS13061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13061.1 Public Homo sapiens 20 HSPA12B 24 110 108 CCDS HistoryNCBI Gene:116835Re-query CCDS DB by CCDS ID:13061.1Re-query CCDS DB by GeneID:116835See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13061.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254963.7 ENSP00000254963.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254963.7Link to Ensembl Protein Viewer:ENSP00000254963.2Re-query CCDS DB by Nucleotide ID:ENST00000254963Re-query CCDS DB by Protein ID:ENSP00000254963
Original member Current member NCBI NM_052970.5 NP_443202.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052970.5Link to Protein Sequence:NP_443202.3Re-query CCDS DB by Nucleotide ID:NM_052970Re-query CCDS DB by Protein ID:NP_443202Link to BLAST:NP_443202.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443202.3 686 Q96MM6 686 100% 0 0

Chromosomal Locations for CCDS 13061.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3738675 3738717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3740815 3740912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3742284 3742408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3744902 3745088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3745493 3745597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3745915 3746031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3748217 3748391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3749232 3749318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3749750 3749854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3749969 3750227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3750804 3750907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3751511 3752166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGTTGGCTGTCCCGGAGATGGGCCTGCAGGGGCTGTACATCGGCTCCAGCCCGGAGCGGTCCCCAGTGC
CTAGCCCACCCGGCTCCCCGAGGACCCAGGAAAGCTGCGGCATTGCCCCCCTCACACCCTCGCAGTCTCC
AAAACCCGAGGTCCGAGCCCCCCAGCAGGCCTCCTTCTCTGTGGTGGTGGCCATTGACTTCGGCACCACG
TCTAGTGGCTATGCTTTCAGCTTTGCCAGTGACCCTGAGGCCATCCACATGATGAGGAAATGGGAGGGCG
GAGACCCGGGCGTGGCCCACCAGAAGACCCCGACCTGCCTGCTGCTGACTCCGGAGGGCGCCTTCCACAG
CTTTGGCTACACCGCCCGCGATTACTACCATGACCTGGACCCCGAAGAGGCGCGGGACTGGCTCTACTTC
GAGAAGTTCAAGATGAAGATCCACAGCGCCACGGATCTCACCTTGAAGACCCAGCTAGAGGCAGTAAATG
GAAAGACGATGCCCGCCCTGGAGGTGTTCGCCCATGCCCTGCGCTTCTTCAGGGAGCACGCCCTTCAGGA
GCTGAGGGAGCAGAGCCCATCGCTGCCAGAGAAGGACACTGTGCGCTGGGTGTTGACGGTGCCTGCCATC
TGGAAACAGCCAGCCAAGCAGTTCATGCGGGAGGCTGCCTACCTGGCTGGACTAGTGTCCCGAGAGAATG
CAGAGCAGCTACTCATCGCCCTGGAGCCCGAGGCCGCCTCGGTATACTGCCGCAAGCTGCGCCTGCACCA
GCTCCTGGACCTGAGTGGCCGGGCCCCAGGTGGTGGGCGCCTGGGTGAGCGCCGCTCCATCGACTCCAGC
TTCCGTCAGGCTCGGGAGCAGCTGCGAAGGTCCCGCCACAGCCGCACGTTCCTGGTGGAGTCAGGCGTAG
GAGAGCTGTGGGCAGAGATGCAAGCAGGAGACCGCTACGTGGTGGCCGACTGCGGCGGAGGCACCGTGGA
CCTGACGGTGCACCAGCTGGAGCAGCCCCATGGCACCCTCAAGGAGCTCTACAAGGCATCTGGGGGCCCT
TATGGCGCGGTGGGCGTGGACCTGGCCTTCGAGCAGCTGCTGTGCCGCATCTTCGGCGAGGACTTCATCG
CCACCTTCAAAAGGCAACGGCCGGCAGCCTGGGTAGATCTGACCATCGCCTTCGAGGCTCGCAAGCGCAC
TGCTGGCCCACACCGTGCAGGGGCGCTCAACATCTCGCTGCCCTTCTCCTTCATTGACTTCTACCGCAAG
CAGCGGGGCCACAACGTGGAGACCGCTCTGCGCAGGAGCAGCGTGAACTTCGTGAAGTGGTCCTCACAGG
GGATGCTCCGAATGTCTTGTGAAGCCATGAACGAGCTCTTTCAGCCCACCGTCAGCGGGATCATCCAGCA
CATAGAGGCCCTGCTGGCACGGCCGGAGGTGCAGGGTGTGAAGCTGCTGTTCCTAGTGGGCGGCTTCGCC
GAGTCAGCGGTGCTGCAGCACGCGGTGCAGGCGGCGCTGGGCGCCCGCGGTCTGCGTGTCGTGGTCCCGC
ACGACGTGGGCCTCACCATCCTCAAAGGCGCGGTGCTGTTCGGCCAGGCGCCGGGCGTGGTGCGGGTCCG
CCGCTCGCCGCTCACCTATGGCGTGGGCGTGCTCAACCGCTTTGTGCCTGGGCGCCACCCGCCCGAAAAG
CTGCTGGTTCGCGACGGCCGCCGCTGGTGCACCGACGTCTTCGAGCGCTTCGTGGCCGCCGAGCAGTCGG
TGGCCCTGGGCGAGGAGGTGCGGCGCAGCTACTGCCCGGCGCGTCCCGGCCAGCGGCGCGTACTCATCAA
CCTGTACTGCTGCGCGGCAGAGGATGCGCGCTTCATCACCGACCCCGGCGTGCGCAAATGCGGCGCGCTC
AGCCTCGAGCTTGAGCCCGCCGACTGCGGCCAGGACACCGCCGGCGCGCCTCCCGGCCGCCGCGAGATCC
GCGCCGCCATGCAGTTTGGCGACACCGAAATTAAGGTCACCGCCGTCGACGTCAGCACCAATCGCTCCGT
GCGCGCGTCCATCGACTTTCTTTCCAACTGA

Translation (686 aa):
MLAVPEMGLQGLYIGSSPERSPVPSPPGSPRTQESCGIAPLTPSQSPKPEVRAPQQASFSVVVAIDFGTT
SSGYAFSFASDPEAIHMMRKWEGGDPGVAHQKTPTCLLLTPEGAFHSFGYTARDYYHDLDPEEARDWLYF
EKFKMKIHSATDLTLKTQLEAVNGKTMPALEVFAHALRFFREHALQELREQSPSLPEKDTVRWVLTVPAI
WKQPAKQFMREAAYLAGLVSRENAEQLLIALEPEAASVYCRKLRLHQLLDLSGRAPGGGRLGERRSIDSS
FRQAREQLRRSRHSRTFLVESGVGELWAEMQAGDRYVVADCGGGTVDLTVHQLEQPHGTLKELYKASGGP
YGAVGVDLAFEQLLCRIFGEDFIATFKRQRPAAWVDLTIAFEARKRTAGPHRAGALNISLPFSFIDFYRK
QRGHNVETALRRSSVNFVKWSSQGMLRMSCEAMNELFQPTVSGIIQHIEALLARPEVQGVKLLFLVGGFA
ESAVLQHAVQAALGARGLRVVVPHDVGLTILKGAVLFGQAPGVVRVRRSPLTYGVGVLNRFVPGRHPPEK
LLVRDGRRWCTDVFERFVAAEQSVALGEEVRRSYCPARPGQRRVLINLYCCAAEDARFITDPGVRKCGAL
SLELEPADCGQDTAGAPPGRREIRAAMQFGDTEIKVTAVDVSTNRSVRASIDFLSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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