NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13089.1 Public Homo sapiens 20 PROKR2 24 110 108 CCDS HistoryNCBI Gene:128674Re-query CCDS DB by CCDS ID:13089.1Re-query CCDS DB by GeneID:128674See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13089.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217270.4 ENSP00000217270.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000217270.4Link to Ensembl Protein Viewer:ENSP00000217270.3Re-query CCDS DB by Nucleotide ID:ENST00000217270Re-query CCDS DB by Protein ID:ENSP00000217270
Original member Current member EBI ENST00000678254.1 ENSP00000504128.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000678254.1Link to Ensembl Protein Viewer:ENSP00000504128.1Re-query CCDS DB by Nucleotide ID:ENST00000678254Re-query CCDS DB by Protein ID:ENSP00000504128
Original member Current member NCBI NM_144773.4 NP_658986.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144773.4Link to Protein Sequence:NP_658986.1Re-query CCDS DB by Nucleotide ID:NM_144773Re-query CCDS DB by Protein ID:NP_658986Link to BLAST:NP_658986.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_658986.1 384 Q8NFJ6 384 100% 0 0

Chromosomal Locations for CCDS 13089.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 5302040 5302736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5313912 5314369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGGCAGCCCAGAATGGAAACACCAGTTTCACACCCAACTTTAATCCACCCCAAGACCATGCCTCCTCCC
TCTCCTTTAACTTCAGTTATGGTGATTATGACCTCCCTATGGATGAGGATGAGGACATGACCAAGACCCG
GACCTTCTTCGCAGCCAAGATCGTCATTGGCATTGCACTGGCAGGCATCATGCTGGTCTGCGGCATCGGT
AACTTTGTCTTTATCGCTGCCCTCACCCGCTATAAGAAGTTGCGCAACCTCACCAATCTGCTCATTGCCA
ACCTGGCCATCTCCGACTTCCTGGTGGCCATCATCTGCTGCCCCTTCGAGATGGACTACTACGTGGTACG
GCAGCTCTCCTGGGAGCATGGCCACGTGCTCTGTGCCTCCGTCAACTACCTGCGCACCGTCTCCCTCTAC
GTCTCCACCAATGCCTTGCTGGCCATTGCCATTGACAGATATCTCGCCATCGTTCACCCCTTGAAACCAC
GGATGAATTATCAAACGGCCTCCTTCCTGATCGCCTTGGTCTGGATGGTGTCCATTCTCATTGCCATCCC
ATCGGCTTACTTTGCAACAGAAACGGTCCTCTTTATTGTCAAGAGCCAGGAGAAGATCTTCTGTGGCCAG
ATCTGGCCTGTGGATCAGCAGCTCTACTACAAGTCCTACTTCCTCTTCATCTTTGGTGTCGAGTTCGTGG
GCCCTGTGGTCACCATGACCCTGTGCTATGCCAGGATCTCCCGGGAGCTCTGGTTCAAGGCAGTCCCTGG
GTTCCAGACGGAGCAGATTCGCAAGCGGCTGCGCTGCCGCAGGAAGACGGTCCTGGTGCTCATGTGCATT
CTCACGGCCTATGTGCTGTGCTGGGCACCCTTCTACGGTTTCACCATCGTTCGTGACTTCTTCCCCACTG
TGTTCGTGAAGGAAAAGCACTACCTCACTGCCTTCTACGTGGTCGAGTGCATCGCCATGAGCAACAGCAT
GATCAACACCGTGTGCTTCGTGACGGTCAAGAACAACACCATGAAGTACTTCAAGAAGATGATGCTGCTG
CACTGGCGTCCCTCCCAGCGGGGGAGCAAGTCCAGTGCTGACCTTGACCTCAGAACCAACGGGGTGCCCA
CCACAGAAGAGGTGGACTGTATCAGGCTGAAGTGA

Translation (384 aa):
MAAQNGNTSFTPNFNPPQDHASSLSFNFSYGDYDLPMDEDEDMTKTRTFFAAKIVIGIALAGIMLVCGIG
NFVFIAALTRYKKLRNLTNLLIANLAISDFLVAIICCPFEMDYYVVRQLSWEHGHVLCASVNYLRTVSLY
VSTNALLAIAIDRYLAIVHPLKPRMNYQTASFLIALVWMVSILIAIPSAYFATETVLFIVKSQEKIFCGQ
IWPVDQQLYYKSYFLFIFGVEFVGPVVTMTLCYARISRELWFKAVPGFQTEQIRKRLRCRRKTVLVLMCI
LTAYVLCWAPFYGFTIVRDFFPTVFVKEKHYLTAFYVVECIAMSNSMINTVCFVTVKNNTMKYFKKMMLL
HWRPSQRGSKSSADLDLRTNGVPTTEEVDCIRLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH