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Report for CCDS13138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13138.1 Public Homo sapiens 20 DTD1 24 110 108 CCDS HistoryNCBI Gene:92675Re-query CCDS DB by CCDS ID:13138.1Re-query CCDS DB by GeneID:92675See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13138.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377452.4 ENSP00000366672.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377452.4Link to Ensembl Protein Viewer:ENSP00000366672.4Re-query CCDS DB by Nucleotide ID:ENST00000377452Re-query CCDS DB by Protein ID:ENSP00000366672
Original member Current member NCBI NM_080820.6 NP_543010.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080820.6Link to Protein Sequence:NP_543010.3Re-query CCDS DB by Nucleotide ID:NM_080820Re-query CCDS DB by Protein ID:NP_543010Link to BLAST:NP_543010.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543010.3 209 Q8TEA8 209 100% 0 0

Chromosomal Locations for CCDS 13138.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 18588073 18588115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18593731 18593821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18596006 18596241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18628127 18628233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18744100 18744252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGAAGGCCGTGGTGCAGCGCGTCACCCGGGCCAGCGTCACAGTTGGAGGAGAGCAGATTAGTGCCATTG
GAAGGGGCATATGTGTGTTGCTGGGTATTTCCCTGGAGGATACGCAGAAGGAACTGGAACACATGGTCCG
AAAGATTCTAAACCTGCGTGTATTTGAGGATGAGAGTGGGAAGCACTGGTCGAAGAGTGTGATGGACAAA
CAGTACGAGATTCTGTGTGTCAGCCAGTTTACCCTCCAGTGTGTCCTGAAGGGAAACAAGCCTGATTTCC
ACCTAGCAATGCCCACGGAGCAGGCAGAGGGCTTCTACAACAGCTTCCTGGAGCAGCTGCGTAAAACATA
CAGGCCGGAGCTTATCAAAGATGGCAAGTTTGGGGCCTACATGCAGGTGCACATTCAGAATGATGGGCCT
GTGACCATAGAGCTGGAATCGCCAGCTCCCGGCACTGCTACCTCTGACCCAAAGCAGCTGTCAAAGCTCG
AAAAACAGCAGCAGAGGAAAGAAAAGACCAGAGCTAAGGGACCTTCTGAATCAAGCAAGGAAAGAAACAC
TCCCCGAAAAGAAGACCGCAGTGCCAGCAGCGGGGCTGAGGGCGACGTGTCCTCTGAACGGGAGCCGTAG

Translation (209 aa):
MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDESGKHWSKSVMDK
QYEILCVSQFTLQCVLKGNKPDFHLAMPTEQAEGFYNSFLEQLRKTYRPELIKDGKFGAYMQVHIQNDGP
VTIELESPAPGTATSDPKQLSKLEKQQQRKEKTRAKGPSESSKERNTPRKEDRSASSGAEGDVSSEREP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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