NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13151.1 Public Homo sapiens 20 GZF1 24 110 108 CCDS HistoryNCBI Gene:64412Re-query CCDS DB by CCDS ID:13151.1Re-query CCDS DB by GeneID:64412See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13151.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338121.10 ENSP00000338290.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338121.10Link to Ensembl Protein Viewer:ENSP00000338290.5Re-query CCDS DB by Nucleotide ID:ENST00000338121Re-query CCDS DB by Protein ID:ENSP00000338290
Original member Current member EBI ENST00000377051.2 ENSP00000366250.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377051.2Link to Ensembl Protein Viewer:ENSP00000366250.2Re-query CCDS DB by Nucleotide ID:ENST00000377051Re-query CCDS DB by Protein ID:ENSP00000366250
Original member Current member NCBI NM_001317012.2 NP_001303941.1 Accepted alive Link to Nucleotide Sequence:NM_001317012.2Link to Protein Sequence:NP_001303941.1Re-query CCDS DB by Nucleotide ID:NM_001317012Re-query CCDS DB by Protein ID:NP_001303941Link to BLAST:NP_001303941.1
Original member Current member NCBI NM_022482.5 NP_071927.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022482.5Link to Protein Sequence:NP_071927.1Re-query CCDS DB by Nucleotide ID:NM_022482Re-query CCDS DB by Protein ID:NP_071927Link to BLAST:NP_071927.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303941.1 711 Q9H116-1 711 100% 0 0
NP_071927.1 711 Q9H116-1 711 100% 0 0

Chromosomal Locations for CCDS 13151.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 23364384 23365747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23367003 23367097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23368762 23368929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23369584 23369741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23370091 23370441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGGAAAGCGGTGCAGTTCTGCTGGAATCCAAATCCTCCCCATTTAACCTACTGCATGAGATGCATGAGC
TTCGCCTCCTGGGTCACCTGTGTGACGTGACAGTCAGCGTGGAGTATCAGGGTGTCCGCAAAGACTTCAT
GGCCCACAAGGCAGTGCTGGCTGCCACCAGCAAGTTTTTTAAGGAAGTGTTCCTTAATGAGAAGAGTGTG
GATGGTACTAGGACTAATGTCTACTTAAATGAAGTGCAGGTTGCTGACTTTGCTTCATTTCTTGAGTTTG
TCTACACTGCAAAGGTACAGGTGGAAGAAGATCGGGTGCAGCGAATGCTGGAAGTGGCTGAAAAGCTGAA
ATGTTTGGATTTATCAGAAACTTGTTTTCAATTAAAGAAACAGATGTTAGAGTCAGTACTTTTGGAGTTG
CAAAATTTCTCAGAGTCTCAGGAGGTGGAGGTGAGCAGTGGCTCCCAAGTTAGTGCTGCTCCTGCCCCCA
GGGCAAGTGTGGCCACCGATGGCCCTCACCCCAGTGGTCTCACGGATTCCTTGGACTACCCAGGAGAGAG
AGCCAGCAATGGCATGTCTTCAGATTTGCCACCGAAGAAGTCCAAGGACAAACTAGACAAGAAGAAAGAG
GTAGTTAAACCTCCCTACCCTAAAATCAGGAGAGCTAGTGGAAGGCTGGCTGGGAGGAAGGTCTTTGTGG
AGATCCCTAAAAAGAAATATACGAGAAGACTCCGAGAGCAGCAGAAAACTGCTGAGGGTGATGTGGGGGA
CTACAGGTGTCCCCAGGACCAAAGCCCGGACAGGGTGGGCACGGAGATGGAGCAGGTTTCCAAAAATGAG
GGTTGCCAGGCAGGTGCTGAGTTGGAGGAATTGTCAAAGAAAGCAGGGCCGGAGGAGGAAGAGGAGGAGG
AGGAGGAGGACGAAGAAGGGGAGAAGAAGAAGAGCAACTTTAAGTGCAGCATTTGCGAGAAGGCGTTTCT
GTATGAGAAGAGCTTCCTGAAGCACAGCAAGCACCGCCACGGCGTGGCCACCGAGGTGGTGTACCGCTGC
GACACCTGCGGCCAGACCTTCGCCAACCGCTGCAACCTGAAGAGCCACCAGCGCCACGTGCACAGCAGCG
AGCGCCATTTCCCATGCGAGCTGTGCGGGAAGAAGTTCAAGCGCAAGAAGGACGTGAAGCGGCACGTGCT
GCAGGTGCATGAGGGCGGCGGCGAGCGGCACCGCTGCGGCCAGTGCGGCAAGGGCCTGAGTTCCAAGACA
GCGCTGCGGCTGCACGAGCGCACACACACGGGAGACCGGCCCTACGGCTGCACCGAGTGCGGCGCCAGGT
TCTCGCAGCCGTCCGCGCTCAAGACGCACATGAGAATTCATACAGGGGAAAAACCTTTTGTCTGTGATGA
ATGTGGTGCAAGATTCACTCAGAACCACATGCTGATTTATCATAAAAGGTGTCACACAGGTGAAAGACCT
TTTATGTGTGAAACATGTGGCAAGAGTTTTGCTTCTAAGGAGTACTTAAAACACCACAATAGAATCCATA
CTGGATCCAAACCCTTTAAATGTGAAGTATGTTTCAGGACTTTTGCCCAGCGGAATTCACTGTACCAGCA
TATTAAAGTCCACACAGGGGAGCGTCCCTACTGCTGTGACCAGTGCGGCAAGCAGTTCACCCAGCTCAAC
GCCCTCCAGCGCCACCGCCGCATCCACACAGGGGAGAGGCCATTCATGTGCAATGCGTGCGGACGGACAT
TCACCGACAAGTCCACTCTTCGGCGGCACACCTCAATACACGATAAGAATACTCCATGGAAGTCTTTCCT
TGTCATTGTAGATGGCTCGCCCAAGAACGATGACGGACACAAGACTGAACAGCCTGACGAAGAGTATGTG
TCATCCAAGCTTTCGGATAAATTGCTGTCTTTTGCAGAAAATGGCCATTTCCACAACCTGGCTGCAGTCC
AAGACACTGTACCTACCATGCAGGAGAACAGTTCTGCTGACACAGCCTGCAAGGCAGATGACTCCGTGGT
GTCCCAGGACACCCTCCTGGCCACCACCATCAGTGAGCTTAGCGAGCTGACCCCACAGACAGACTCGATG
CCCACACAGCTTCACTCTTTGAGCAACATGGAATAA

Translation (711 aa):
MESGAVLLESKSSPFNLLHEMHELRLLGHLCDVTVSVEYQGVRKDFMAHKAVLAATSKFFKEVFLNEKSV
DGTRTNVYLNEVQVADFASFLEFVYTAKVQVEEDRVQRMLEVAEKLKCLDLSETCFQLKKQMLESVLLEL
QNFSESQEVEVSSGSQVSAAPAPRASVATDGPHPSGLTDSLDYPGERASNGMSSDLPPKKSKDKLDKKKE
VVKPPYPKIRRASGRLAGRKVFVEIPKKKYTRRLREQQKTAEGDVGDYRCPQDQSPDRVGTEMEQVSKNE
GCQAGAELEELSKKAGPEEEEEEEEEDEEGEKKKSNFKCSICEKAFLYEKSFLKHSKHRHGVATEVVYRC
DTCGQTFANRCNLKSHQRHVHSSERHFPCELCGKKFKRKKDVKRHVLQVHEGGGERHRCGQCGKGLSSKT
ALRLHERTHTGDRPYGCTECGARFSQPSALKTHMRIHTGEKPFVCDECGARFTQNHMLIYHKRCHTGERP
FMCETCGKSFASKEYLKHHNRIHTGSKPFKCEVCFRTFAQRNSLYQHIKVHTGERPYCCDQCGKQFTQLN
ALQRHRRIHTGERPFMCNACGRTFTDKSTLRRHTSIHDKNTPWKSFLVIVDGSPKNDDGHKTEQPDEEYV
SSKLSDKLLSFAENGHFHNLAAVQDTVPTMQENSSADTACKADDSVVSQDTLLATTISELSELTPQTDSM
PTQLHSLSNME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH