NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13202.1 Public Homo sapiens 20 NOL4L 24 110 108 CCDS HistoryNCBI Gene:140688Re-query CCDS DB by CCDS ID:13202.1Re-query CCDS DB by GeneID:140688See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13202.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359676.9 ENSP00000352704.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359676.9Link to Ensembl Protein Viewer:ENSP00000352704.5Re-query CCDS DB by Nucleotide ID:ENST00000359676Re-query CCDS DB by Protein ID:ENSP00000352704
Original member Current member NCBI NM_080616.6 NP_542183.2 Accepted alive Link to Nucleotide Sequence:NM_080616.6Link to Protein Sequence:NP_542183.2Re-query CCDS DB by Nucleotide ID:NM_080616Re-query CCDS DB by Protein ID:NP_542183Link to BLAST:NP_542183.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542183.2 436 Q96MY1-1 436 100% 0 0

Chromosomal Locations for CCDS 13202.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 32447596 32447816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32452236 32452437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32452884 32453006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32453304 32453495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32453576 32453761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32456118 32456395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32474601 32474709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGAGCGACTCCACATGGATGTCAGCTGACCCGCACCTGGCCTCCAGCCTGAGCCCCAGCCAGGACGAGA
GGATGCGGAGCCCGCAGAACCTCCACAGTCAAGAGGACGATGACTCCTCCTCTGAGAGTGGCAGCGGCAA
TGGCTCCTCCACCCTGAACCCATCCACGTCGAGCAGCACGCAGGGCGACCCTGCCTTCCCCGAGATGAAT
GGCAACGGCGCCGTGGCCCCCATGGACTTCACCACGGCCGCCGAGGATCAGCCCATCAACCTGTGTGACA
AGCTCCCGCCGGCCACGGCACTTGGCACAGCCTCCTACCCCTCGGATGGCTGCGGTGCCGACGGGCTGCG
GAGCCGCGTCAAATACGGGGTGAAGACCACCCCCGAGTCCCCCCCCTACAGCTCTGGGAGCTACGATTCC
ATCAAGACCGAGGTCAGCGGCTGCCCTGAGGACCTGACAGTGGGCCGGGCCCCGACGGCAGATGATGACG
ACGATGACCACGATGACCATGAGGACAATGACAAGATGAACGACTCTGAAGGCATGGACCCTGAGCGTCT
TAAGGCCTTCAACATGTTTGTGCGTCTCTTTGTGGACGAGAACCTGGACCGCATGGTGCCCATCTCCAAG
CAGCCCAAGGAGAAGATCCAGGCCATCATCGAGTCCTGCAGCCGGCAGTTCCCTGAGTTCCAGGAGCGGG
CCCGCAAGCGCATCCGCACGTACCTCAAGTCCTGCCGTCGCATGAAGAAGAACGGCATGGAGATGACCAG
ACCCACGCCACCCCATCTGACCTCGGCCATGGCAGAAAACATCCTGGCAGCTGCCTGTGAGAGCGAGACA
AGAAAGGCAGCCAAGCGGATGCGTCTAGAGATCTACCAGTCCTCACAGGATGAGCCCATAGCCCTGGACA
AGCAGCACTCGCGGGACTCCGCAGCCATCACCCACTCCACCTACTCACTGCCAGCCTCCTCCTACTCCCA
GGACCCTGTGTACGCCAACGGCGGCCTCAACTACAGTTACCGCGGGTACGGGGCCTTGAGCAGCAACCTG
CAGCCCCCTGCCTCCCTCCAAACAGGAAACCACAGTAATGGGCCCACGGACCTCAGCATGAAAGGCGGGG
CCTCTACCACCTCCACCACCCCCACGCCCACCCCCTCCAGCACCAGCACCAGCAGGCCCGTGCCCACCGC
TCAGCTCAGCCCCACGGAGATCAGCGCCGTGCGGCAGCTCATCGCGGGCTACCGGGAGTCTGCTGCCTTC
CTGCTGCGCTCTGCAGATGAACTGGAAAACCTCATCCTACAGCAGAACTGA

Translation (436 aa):
MSDSTWMSADPHLASSLSPSQDERMRSPQNLHSQEDDDSSSESGSGNGSSTLNPSTSSSTQGDPAFPEMN
GNGAVAPMDFTTAAEDQPINLCDKLPPATALGTASYPSDGCGADGLRSRVKYGVKTTPESPPYSSGSYDS
IKTEVSGCPEDLTVGRAPTADDDDDDHDDHEDNDKMNDSEGMDPERLKAFNMFVRLFVDENLDRMVPISK
QPKEKIQAIIESCSRQFPEFQERARKRIRTYLKSCRRMKKNGMEMTRPTPPHLTSAMAENILAAACESET
RKAAKRMRLEIYQSSQDEPIALDKQHSRDSAAITHSTYSLPASSYSQDPVYANGGLNYSYRGYGALSSNL
QPPASLQTGNHSNGPTDLSMKGGASTTSTTPTPTPSSTSTSRPVPTAQLSPTEISAVRQLIAGYRESAAF
LLRSADELENLILQQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH