NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13240.1 Public Homo sapiens 20 TP53INP2 24 110 108 CCDS HistoryNCBI Gene:58476Re-query CCDS DB by CCDS ID:13240.1Re-query CCDS DB by GeneID:58476See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13240.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374809.6 ENSP00000363942.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374809.6Link to Ensembl Protein Viewer:ENSP00000363942.2Re-query CCDS DB by Nucleotide ID:ENST00000374809Re-query CCDS DB by Protein ID:ENSP00000363942
Original member Current member EBI ENST00000374810.8 ENSP00000363943.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374810.8Link to Ensembl Protein Viewer:ENSP00000363943.3Re-query CCDS DB by Nucleotide ID:ENST00000374810Re-query CCDS DB by Protein ID:ENSP00000363943
Original member Current member NCBI NM_001329429.2 NP_001316358.1 Accepted alive Link to Nucleotide Sequence:NM_001329429.2Link to Protein Sequence:NP_001316358.1Re-query CCDS DB by Nucleotide ID:NM_001329429Re-query CCDS DB by Protein ID:NP_001316358Link to BLAST:NP_001316358.1
Original member Current member NCBI NM_001329430.2 NP_001316359.1 Accepted alive Link to Nucleotide Sequence:NM_001329430.2Link to Protein Sequence:NP_001316359.1Re-query CCDS DB by Nucleotide ID:NM_001329430Re-query CCDS DB by Protein ID:NP_001316359Link to BLAST:NP_001316359.1
Original member Current member NCBI NM_001329431.2 NP_001316360.1 Accepted alive Link to Nucleotide Sequence:NM_001329431.2Link to Protein Sequence:NP_001316360.1Re-query CCDS DB by Nucleotide ID:NM_001329431Re-query CCDS DB by Protein ID:NP_001316360Link to BLAST:NP_001316360.1
Original member Current member NCBI NM_021202.3 NP_067025.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021202.3Link to Protein Sequence:NP_067025.1Re-query CCDS DB by Nucleotide ID:NM_021202Re-query CCDS DB by Protein ID:NP_067025Link to BLAST:NP_067025.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316358.1 220 Q8IXH6 220 100% 0 0
NP_001316359.1 220 Q8IXH6 220 100% 0 0
NP_001316360.1 220 Q8IXH6 220 100% 0 0
NP_067025.1 220 Q8IXH6 220 100% 0 0

Chromosomal Locations for CCDS 13240.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 34708740 34708863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34709236 34709524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 34710058 34710307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGTTCCAGCGCCTCTCCAGCCTCTTCTTCAGCACCCCCTCGCCCCCCGAAGACCCCGACTGCCCCCGCG
CCTTCGTGTCGGAGGAGGATGAAGTGGACGGCTGGCTCATCATTGACCTGCCGGACAGCTACGCGGCTCC
ACCCAGCCCCGGGGCCGCCCCTGCCCCCGCGGGCCGCCCTCCGCCCGCGCCCTCCTTGATGGACGAGAGC
TGGTTTGTTACCCCTCCCGCCTGTTTTACGGCAGAGGGGCCTGGACTCGGTCCCGCCCGCCTCCAGAGCA
GTCCCCTGGAGGACCTCCTCATCGAGCACCCCAGCATGTCCGTTTACGTCACCGGCAGCACCATAGTGCT
AGAGCCCGGGTCCCCTTCCCCGCTCCCGGACGCGGCCCTGCCTGACGGCGACCTCAGCGAAGGGGAATTG
ACGCCCGCCCGCCGCGAGCCGCGGGCCGCGCGCCACGCCGCTCCTCTCCCAGCGCGGGCGGCGCTGCTGG
AGAAGGCGGGCCAGGTGCGGCGGCTGCAGCGGGCCCGGCAGCGGGCAGAGCGCCACGCGCTGAGCGCCAA
GGCGGTGCAGCGGCAGAACCGAGCCCGCGAGAGCCGTCCGCGCCGGTCCAAGAACCAGAGCAGCTTCATC
TACCAGCCGTGCCAGCGCCAGTTCAACTACTGA

Translation (220 aa):
MFQRLSSLFFSTPSPPEDPDCPRAFVSEEDEVDGWLIIDLPDSYAAPPSPGAAPAPAGRPPPAPSLMDES
WFVTPPACFTAEGPGLGPARLQSSPLEDLLIEHPSMSVYVTGSTIVLEPGSPSPLPDAALPDGDLSEGEL
TPARREPRAARHAAPLPARAALLEKAGQVRRLQRARQRAERHALSAKAVQRQNRARESRPRRSKNQSSFI
YQPCQRQFNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH