NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13300.1 Public Homo sapiens 20 TTI1 24 110 108 CCDS HistoryNCBI Gene:9675Re-query CCDS DB by CCDS ID:13300.1Re-query CCDS DB by GeneID:9675See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13300.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373447.8 ENSP00000362546.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373447.8Link to Ensembl Protein Viewer:ENSP00000362546.3Re-query CCDS DB by Nucleotide ID:ENST00000373447Re-query CCDS DB by Protein ID:ENSP00000362546
Original member Current member EBI ENST00000373448.6 ENSP00000362547.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373448.6Link to Ensembl Protein Viewer:ENSP00000362547.2Re-query CCDS DB by Nucleotide ID:ENST00000373448Re-query CCDS DB by Protein ID:ENSP00000362547
Original member Current member EBI ENST00000449821.1 ENSP00000407270.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449821.1Link to Ensembl Protein Viewer:ENSP00000407270.1Re-query CCDS DB by Nucleotide ID:ENST00000449821Re-query CCDS DB by Protein ID:ENSP00000407270
Original member Current member NCBI NM_001303457.2 NP_001290386.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001303457.2Link to Protein Sequence:NP_001290386.1Re-query CCDS DB by Nucleotide ID:NM_001303457Re-query CCDS DB by Protein ID:NP_001290386Link to BLAST:NP_001290386.1
Original member Current member NCBI NM_014657.3 NP_055472.1 Accepted alive Link to Nucleotide Sequence:NM_014657.3Link to Protein Sequence:NP_055472.1Re-query CCDS DB by Nucleotide ID:NM_014657Re-query CCDS DB by Protein ID:NP_055472Link to BLAST:NP_055472.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290386.1 1089 O43156 1089 100% 0 0
NP_055472.1 1089 O43156 1089 100% 0 0

Chromosomal Locations for CCDS 13300.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 37983456 37983639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37996375 37996462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37996749 37996953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 37999188 37999328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38002628 38002776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38006197 38006397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38011515 38013816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3270 nt):
ATGGCAGTTTTTGATACTCCTGAGGAGGCCTTTGGTGTCTTACGTCCAGTCTGTGTTCAGCTCACAAAGA
CCCAGACAGTGGAGAATGTGGAGCATCTGCAGACACGACTACAAGCTGTGAGTGACAGTGCCCTTCAGGA
ACTTCAGCAGTACATCCTCTTCCCTCTGCGATTTACCCTGAAGACCCCAGGTCCCAAAAGAGAGCGTTTG
ATCCAAAGTGTGGTGGAATGCCTCACATTTGTCCTTTCTTCAACATGTGTGAAAGAACAGGAGCTTCTCC
AGGAACTCTTTTCAGAACTCTCTGCTTGTCTGTATTCACCCAGCTCCCAAAAACCTGCGGCTGTGTCCGA
GGAGTTGAAATTGGCTGTGATCCAGGGACTTAGCACATTAATGCACTCAGCTTATGGGGACATCATTCTG
ACTTTTTATGAGCCCTCCATTCTGCCACGTTTAGGATTTGCTGTATCTTTACTGTTAGGCCTTGCAGAAC
AGGAGAAATCAAAGCAAATTAAAATTGCTGCCTTAAAATGTTTACAGGTTCTACTCTTGCAGTGTGATTG
TCAGGACCATCCAAGGTCATTGGATGAACTTGAACAAAAGCAGCTGGGGGATTTGTTTGCCTCTTTTTTA
CCTGGAATCTCAACTGCACTGACCAGGCTTATCACAGGAGACTTTAAACAAGGTCACAGCATTGTCGTAT
CTTCCCTAAAGATCTTTTACAAGACAGTGAGCTTCATTATGGCTGATGAACAGCTCAAAAGAATCTCAAA
GGTCCAAGCAAAACCTGCAGTTGAGCACAGAGTAGCAGAGCTGATGGTTTACAGGGAAGCAGATTGGGTA
AAAAAGACTGGCGACAAGTTGACTATCCTTATTAAAAAGATAATTGAGTGTGTTTCTGTTCACCCACACT
GGAAGGTGAGACTGGAACTGGTAGAACTTGTGGAGGACCTTCTTTTGAAGTGCAGTCAATCATTGGTCGA
ATGTGCTGGTCCCCTTCTGAAGGCCTTAGTGGGACTAGTAAATGATGAGAGTCCTGAAATCCAAGCCCAG
TGCAATAAAGTTCTGAGACATTTTGCAGATCAAAAAGTAGTGGTGGGCAACAAAGCCCTCGCTGACATCT
TGTCAGAAAGCCTGCATTCCCTTGCCACATCTCTTCCTCGCCTAATGAACTCCCAAGATGACCAGGGCAA
ATTCTCTACTCTTTCCTTGTTACTTGGTTATCTGAAACTCTTGGGCCCAAAAATAAACTTTGTCCTCAAC
TCTGTGGCCCATCTCCAGCGGCTTTCCAAAGCACTCATCCAAGTTCTAGAGCTAGACGTGGCTGACATCA
AGATTGTTGAGGAACGGCGTTGGAACTCTGATGATCTGAATGCTTCTCCAAAGACCTCAGCCACACAGCC
TTGGAACCGCATCCAGAGGAGATATTTCCGCTTCTTCACTGATGAGAGAATCTTCATGCTCTTGAGGCAG
GTTTGTCAGCTACTTGGTTATTATGGGAATCTTTATTTGCTTGTGGATCACTTTATGGAACTTTACCATC
AATCTGTGGTTTACCGGAAGCAAGCTGCCATGATCCTTAATGAACTGGTTACAGGGGCTGCTGGGCTGGA
GGTTGAGGATCTTCACGAAAAACATATTAAAACAAACCCAGAAGAACTGAGAGAGATTGTGACATCTATA
CTTGAAGAATACACAAGTCAAGAAAATTGGTATTTGGTTACCTGTCTTGAAACTGAGGAAATGGGAGAGG
AGCTGATGATGGAGCACCCAGGCCTCCAAGCCATCACGTCTGGTGAACACACCTGCCAAGTTACATCTTT
TCTAGCCTTCTCAAAGCCAAGTCCCACTATTTGCTCCATGAACAGTAACATCTGGCAAATATGCATTCAG
TTGGAAGGAATTGGCCAGTTTGCATATGCACTAGGAAAAGACTTCTGTTTGCTCTTGATGTCAGCCCTTT
ATCCAGTACTGGAGAAGGCTGGAGACCAAACCCTACTCATTAGTCAGGTGGCTACCAGCACCATGATGGA
CGTTTGCCGTGCTTGTGGCTACGACTCCCTGCAGCACCTGATCAATCAAAATTCAGACTATTTAGTGAAT
GGGATCTCTTTAAATCTGCGTCATCTGGCTCTGCATCCTCATACCCCAAAGGTCCTGGAAGTCATGCTGC
GGAACTCAGATGCTAACCTGCTTCCTTTGGTGGCAGATGTGGTTCAAGATGTCTTGGCCACCCTGGACCA
ATTTTACGATAAGAGAGCTGCTTCCTTTGTCAGCGTTCTGCATGCTCTGATGGCAGCATTAGCCCAGTGG
TTCCCAGACACAGGTAATCTTGGGCACCTCCAAGAGCAAAGTTTAGGAGAAGAGGGAAGTCATTTGAACC
AAAGACCAGCAGCTCTTGAGAAGAGCACCACCACAGCTGAAGACATCGAACAGTTTTTGCTGAACTACCT
CAAAGAGAAGGATGTGGCAGATGGAAATGTCTCGGATTTTGATAATGAAGAAGAGGAACAGTCAGTCCCT
CCCAAAGTGGATGAGAATGACACCCGTCCAGATGTGGAGCCACCACTGCCATTGCAGATCCAAATAGCCA
TGGACGTGATGGAACGCTGCATCCACTTGTTGTCAGATAAAAATCTGCAAATCCGCCTGAAGGTCTTGGA
TGTGCTGGATCTGTGTGTGGTTGTTCTTCAGTCCCACAAAAACCAGCTGCTTCCCTTGGCTCATCAGGCC
TGGCCCTCGCTCGTTCACCGACTCACACGGGACGCCCCCCTGGCAGTGCTTAGAGCCTTCAAGGTTTTAC
GTACCCTGGGAAGCAAGTGTGGTGACTTTCTTCGCAGCCGGTTCTGCAAAGATGTCCTGCCAAAGCTGGC
TGGCTCCCTAGTCACCCAGGCCCCCATCAGTGCCAGGGCTGGACCAGTTTACTCGCACACGCTGGCCTTC
AAGTTGCAGCTGGCTGTCTTACAGGGCCTGGGCCCCCTCTGTGAGAGACTGGACCTAGGTGAGGGTGACC
TGAATAAAGTGGCTGATGCCTGCTTGATTTACCTCAGTGTCAAACAGCCCGTGAAATTACAAGAGGCTGC
CAGGAGCGTCTTCCTCCACTTGATGAAGGTGGACCCAGACTCCACCTGGTTCCTCCTGAACGAGCTTTAC
TGCCCCGTGCAGTTCACACCTCCCCACCCCAGCCTCCACCCTGTGCAGCTGCACGGGGCCAGCGGGCAGC
AGAACCCCTACACGACCAACGTGCTCCAGCTGCTCAAGGAGCTGCAGTGA

Translation (1089 aa):
MAVFDTPEEAFGVLRPVCVQLTKTQTVENVEHLQTRLQAVSDSALQELQQYILFPLRFTLKTPGPKRERL
IQSVVECLTFVLSSTCVKEQELLQELFSELSACLYSPSSQKPAAVSEELKLAVIQGLSTLMHSAYGDIIL
TFYEPSILPRLGFAVSLLLGLAEQEKSKQIKIAALKCLQVLLLQCDCQDHPRSLDELEQKQLGDLFASFL
PGISTALTRLITGDFKQGHSIVVSSLKIFYKTVSFIMADEQLKRISKVQAKPAVEHRVAELMVYREADWV
KKTGDKLTILIKKIIECVSVHPHWKVRLELVELVEDLLLKCSQSLVECAGPLLKALVGLVNDESPEIQAQ
CNKVLRHFADQKVVVGNKALADILSESLHSLATSLPRLMNSQDDQGKFSTLSLLLGYLKLLGPKINFVLN
SVAHLQRLSKALIQVLELDVADIKIVEERRWNSDDLNASPKTSATQPWNRIQRRYFRFFTDERIFMLLRQ
VCQLLGYYGNLYLLVDHFMELYHQSVVYRKQAAMILNELVTGAAGLEVEDLHEKHIKTNPEELREIVTSI
LEEYTSQENWYLVTCLETEEMGEELMMEHPGLQAITSGEHTCQVTSFLAFSKPSPTICSMNSNIWQICIQ
LEGIGQFAYALGKDFCLLLMSALYPVLEKAGDQTLLISQVATSTMMDVCRACGYDSLQHLINQNSDYLVN
GISLNLRHLALHPHTPKVLEVMLRNSDANLLPLVADVVQDVLATLDQFYDKRAASFVSVLHALMAALAQW
FPDTGNLGHLQEQSLGEEGSHLNQRPAALEKSTTTAEDIEQFLLNYLKEKDVADGNVSDFDNEEEEQSVP
PKVDENDTRPDVEPPLPLQIQIAMDVMERCIHLLSDKNLQIRLKVLDVLDLCVVVLQSHKNQLLPLAHQA
WPSLVHRLTRDAPLAVLRAFKVLRTLGSKCGDFLRSRFCKDVLPKLAGSLVTQAPISARAGPVYSHTLAF
KLQLAVLQGLGPLCERLDLGEGDLNKVADACLIYLSVKQPVKLQEAARSVFLHLMKVDPDSTWFLLNELY
CPVQFTPPHPSLHPVQLHGASGQQNPYTTNVLQLLKELQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH