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Report for CCDS13414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13414.1 Public Homo sapiens 20 STAU1 24 110 108 CCDS HistoryNCBI Gene:6780Re-query CCDS DB by CCDS ID:13414.1Re-query CCDS DB by GeneID:6780See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13414.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371856.7 ENSP00000360922.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371856.7Link to Ensembl Protein Viewer:ENSP00000360922.2Re-query CCDS DB by Nucleotide ID:ENST00000371856Re-query CCDS DB by Protein ID:ENSP00000360922
Original member Current member NCBI NM_001319135.2 NP_001306064.1 Accepted alive Link to Nucleotide Sequence:NM_001319135.2Link to Protein Sequence:NP_001306064.1Re-query CCDS DB by Nucleotide ID:NM_001319135Re-query CCDS DB by Protein ID:NP_001306064Link to BLAST:NP_001306064.1
Original member Current member NCBI NM_001322929.2 NP_001309858.1 Accepted alive Link to Nucleotide Sequence:NM_001322929.2Link to Protein Sequence:NP_001309858.1Re-query CCDS DB by Nucleotide ID:NM_001322929Re-query CCDS DB by Protein ID:NP_001309858Link to BLAST:NP_001309858.1
Original member Current member NCBI NM_001322930.2 NP_001309859.1 Accepted alive Link to Nucleotide Sequence:NM_001322930.2Link to Protein Sequence:NP_001309859.1Re-query CCDS DB by Nucleotide ID:NM_001322930Re-query CCDS DB by Protein ID:NP_001309859Link to BLAST:NP_001309859.1
Original member Current member NCBI NM_017453.4 NP_059347.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017453.4Link to Protein Sequence:NP_059347.2Re-query CCDS DB by Nucleotide ID:NM_017453Re-query CCDS DB by Protein ID:NP_059347Link to BLAST:NP_059347.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001306064.1 577 O95793-1 577 100% 0 0
NP_001309858.1 577 O95793-1 577 100% 0 0
NP_001309859.1 577 O95793-1 577 100% 0 0
NP_059347.2 577 O95793-1 577 100% 0 0

Chromosomal Locations for CCDS 13414.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 49114878 49114893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49115782 49115867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49117126 49117248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49117777 49118096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49118333 49118408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49119982 49120128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49123092 49123235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49124375 49124587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49135833 49135931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49151582 49151747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49153933 49154071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49165997 49166201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGTCTCAAGTTCAAGTGCAAGTTCAGAACCCATCTGCTGCTCTCTCAGGGAGCCAAATACTGAACAAGA
ACCAGTCTCTTCTCTCACAGCCTTTGATGAGTATTCCTTCTACTACTAGCTCTCTGCCCTCTGAAAATGC
AGGTAGACCCATTCAAAACTCTGCTTTACCCTCTGCATCTATTACATCCACCAGTGCAGCTGCAGAAAGC
ATAACCCCTACTGTAGAACTAAATGCACTGTGCATGAAACTTGGAAAAAAACCAATGTATAAGCCTGTTG
ACCCTTACTCTCGGATGCAGTCCACCTATAACTACAACATGAGAGGAGGTGCTTATCCCCCGAGGTACTT
TTACCCATTTCCAGTTCCACCTTTACTTTATCAAGTGGAACTTTCTGTGGGAGGACAGCAATTTAATGGC
AAAGGAAAGACAAGACAGGCTGCGAAACACGATGCTGCTGCCAAAGCGTTGAGGATCCTGCAGAATGAGC
CCCTGCCAGAGAGGCTGGAGGTGAATGGAAGAGAATCCGAAGAAGAAAATCTCAATAAATCTGAAATAAG
TCAAGTGTTTGAGATTGCACTTAAACGGAACTTGCCTGTGAATTTCGAGGTGGCCCGGGAGAGTGGCCCA
CCCCACATGAAGAACTTTGTGACCAAGGTTTCGGTTGGGGAGTTTGTGGGGGAAGGTGAAGGGAAAAGCA
AGAAGATTTCAAAGAAAAATGCCGCCATAGCTGTTCTTGAGGAGCTGAAGAAGTTACCGCCCCTGCCTGC
AGTTGAACGAGTAAAGCCTAGAATCAAAAAGAAAACAAAACCCATAGTCAAGCCACAGACAAGCCCAGAA
TATGGCCAGGGGATCAATCCGATTAGCCGACTGGCCCAGATCCAGCAGGCAAAAAAGGAGAAGGAGCCAG
AGTACACGCTCCTCACAGAGCGAGGCCTCCCGCGCCGCAGGGAGTTTGTGATGCAGGTGAAGGTTGGAAA
CCACACTGCAGAAGGAACGGGCACCAACAAGAAGGTGGCCAAGCGCAATGCAGCCGAGAACATGCTGGAG
ATCCTTGGTTTCAAAGTCCCGCAGGCGCAGCCCACCAAACCCGCACTCAAGTCAGAGGAGAAGACACCCA
TAAAGAAACCAGGGGATGGAAGAAAAGTAACCTTTTTTGAACCTGGCTCTGGGGATGAAAATGGGACTAG
TAATAAAGAGGATGAGTTCAGGATGCCTTATCTAAGTCATCAGCAGCTGCCTGCTGGAATTCTTCCCATG
GTGCCCGAGGTCGCCCAGGCTGTAGGAGTTAGTCAAGGACATCACACCAAAGATTTTACCAGGGCAGCTC
CGAATCCTGCCAAGGCCACGGTAACTGCCATGATAGCCCGAGAGTTGTTGTATGGGGGCACCTCGCCCAC
AGCCGAGACCATTTTAAAGAATAACATCTCTTCAGGCCACGTACCCCATGGACCTCTCACGAGACCCTCT
GAGCAACTGGACTATCTTTCCAGAGTCCAGGGATTCCAGGTTGAATACAAAGACTTCCCCAAAAACAACA
AGAACGAATTTGTATCTCTTATCAATTGCTCCTCTCAGCCACCTCTGATCAGCCATGGTATCGGCAAGGA
TGTGGAGTCCTGCCATGATATGGCTGCGCTGAACATCTTAAAGTTGCTGTCTGAGTTGGACCAACAAAGT
ACAGAGATGCCAAGAACAGGAAACGGACCAATGTCTGTGTGTGGGAGGTGCTGA

Translation (577 aa):
MSQVQVQVQNPSAALSGSQILNKNQSLLSQPLMSIPSTTSSLPSENAGRPIQNSALPSASITSTSAAAES
ITPTVELNALCMKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNG
KGKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFEVARESGP
PHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPE
YGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLE
ILGFKVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPM
VPEVAQAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPS
EQLDYLSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSELDQQS
TEMPRTGNGPMSVCGRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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