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Report for CCDS13446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13446.1 Public Homo sapiens 20 DOK5 24 110 108 CCDS HistoryNCBI Gene:55816Re-query CCDS DB by CCDS ID:13446.1Re-query CCDS DB by GeneID:55816See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13446.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262593.10 ENSP00000262593.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262593.10Link to Ensembl Protein Viewer:ENSP00000262593.5Re-query CCDS DB by Nucleotide ID:ENST00000262593Re-query CCDS DB by Protein ID:ENSP00000262593
Original member Current member NCBI NM_018431.5 NP_060901.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018431.5Link to Protein Sequence:NP_060901.2Re-query CCDS DB by Nucleotide ID:NM_018431Re-query CCDS DB by Protein ID:NP_060901Link to BLAST:NP_060901.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060901.2 306 Q9P104-1 306 100% 0 0

Chromosomal Locations for CCDS 13446.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 54475947 54476012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 54554933 54555040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 54588483 54588597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 54588687 54588806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 54591616 54591805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 54610388 54610523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 54643458 54643578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 54650415 54650479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGCTTCCAATTTTAATGACATAGTGAAGCAAGGGTACGTGAGGATCCGGAGCAGACGCCTCGGGATTT
ATCAGCGATGCTGGTTAGTATTCAAGAAAGCTTCAAGCAAAGGTCCAAAAAGACTGGAGAAATTTTCTGA
TGAACGTGCTGCATATTTCAGGTGTTATCATAAGGTTACAGAACTCAATAATGTGAAGAACGTAGCTCGA
TTGCCAAAAAGCACCAAGAAACATGCCATAGGGATTTATTTCAATGACGATACCTCCAAGACTTTTGCTT
GCGAATCAGATCTTGAGGCTGATGAGTGGTGCAAAGTACTCCAGATGGAGTGTGTAGGAACACGGATCAA
TGACATCAGCCTTGGAGAGCCTGACTTACTGGCCACTGGGGTTGAGAGAGAACAGAGTGAGAGATTCAAT
GTGTATTTGATGCCATCTCCTAACTTAGATGTACATGGCGAATGTGCCTTGCAGATTACATATGAGTATA
TCTGTCTTTGGGACGTCCAGAATCCCAGAGTCAAACTCATCTCTTGGCCGCTAAGCGCCCTGCGGCGGTA
TGGACGTGATACTACGTGGTTCACTTTTGAGGCAGGGAGGATGTGTGAGACTGGTGAAGGGCTGTTTATC
TTTCAGACCCGAGACGGGGAGGCCATCTATCAGAAAGTCCACTCTGCTGCCTTGGCCATAGCCGAGCAGC
ACGAGCGCTTGCTACAGAGTGTGAAAAACTCGATGCTCCAGATGAAGATGAGTGAGCGGGCCGCCTCGCT
GAGCACCATGGTGCCCCTGCCTCGCAGCGCCTACTGGCAGCACATCACACGGCAGCACAGCACGGGACAG
CTCTACCGCTTGCAAGATGTTTCCAGCCCTCTGAAGCTTCATCGAACAGAGACTTTTCCAGCCTACAGAT
CTGAGCACTGA

Translation (306 aa):
MASNFNDIVKQGYVRIRSRRLGIYQRCWLVFKKASSKGPKRLEKFSDERAAYFRCYHKVTELNNVKNVAR
LPKSTKKHAIGIYFNDDTSKTFACESDLEADEWCKVLQMECVGTRINDISLGEPDLLATGVEREQSERFN
VYLMPSPNLDVHGECALQITYEYICLWDVQNPRVKLISWPLSALRRYGRDTTWFTFEAGRMCETGEGLFI
FQTRDGEAIYQKVHSAALAIAEQHERLLQSVKNSMLQMKMSERAASLSTMVPLPRSAYWQHITRQHSTGQ
LYRLQDVSSPLKLHRTETFPAYRSEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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