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Report for CCDS13482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13482.1 Public Homo sapiens 20 SYCP2 24 110 108 CCDS HistoryNCBI Gene:10388Re-query CCDS DB by CCDS ID:13482.1Re-query CCDS DB by GeneID:10388See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13482.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357552.8 ENSP00000350162.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357552.8Link to Ensembl Protein Viewer:ENSP00000350162.2Re-query CCDS DB by Nucleotide ID:ENST00000357552Re-query CCDS DB by Protein ID:ENSP00000350162
Original member Current member EBI ENST00000371001.6 ENSP00000360040.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371001.6Link to Ensembl Protein Viewer:ENSP00000360040.2Re-query CCDS DB by Nucleotide ID:ENST00000371001Re-query CCDS DB by Protein ID:ENSP00000360040
Original member Current member NCBI NM_014258.4 NP_055073.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014258.4Link to Protein Sequence:NP_055073.2Re-query CCDS DB by Nucleotide ID:NM_014258Re-query CCDS DB by Protein ID:NP_055073Link to BLAST:NP_055073.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055073.2 1530 Q9BX26 1530 100% 0 0

Chromosomal Locations for CCDS 13482.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 59864311 59864388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59865388 59865444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59865573 59865651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59865807 59865865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59866293 59866392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59866495 59866589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59867711 59867847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59868413 59868568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59868835 59868925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59869798 59869983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59873856 59874061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59875271 59875469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59877385 59877555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59878008 59878045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59880303 59880471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59880966 59881023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59881437 59881492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59881945 59882002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59882095 59882165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59885928 59885964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59886707 59886834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59891990 59892426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59892568 59892701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59893142 59893199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59893524 59893593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59895437 59895597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59896429 59896528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59900138 59900284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59900744 59900818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59901662 59901810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59907364 59907424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59911750 59911845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59912373 59912418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59913975 59914027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59914109 59914251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59915165 59915199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59915465 59915550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59916486 59916571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59919158 59919182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59919493 59919597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59920359 59920487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59921310 59921453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59922390 59922413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4593 nt):
ATGCCAATAAGACCAGATCTCCAGCAGTTGGAAAAATGCATTGATGATGCTTTAAGAAAAAATGATTTCA
AACCTTTGAAAACACTTTTGCAAATTGATATTTGTGAAGATGTGAAGATTAAATGCAGCAAACAGTTTTT
CCACAAGGTGGACAACCTTATATGCAGGGAACTTAATAAAGAGGATATCCACAATGTTTCAGCCATTTTG
GTTTCTGTTGGAAGATGTGGCAAAAATATCAGTGTATTGGGGCAAGCTGGACTTCTAACGATGATAAAAC
AAGGACTAATACAAAAGATGGTTGCCTGGTTTGAAAAATCCAAGGACATTATTCAGAGTCAAGGAAATTC
AAAAGATGAAGCTGTTCTAAATATGATAGAAGACTTAGTTGATCTTCTGCTGGTCATACATGATGTCAGT
GATGAAGGTAAAAAACAAGTAGTGGAAAGTTTCGTACCTCGCATTTGTTCCCTGGTTATTGACTCAAGAG
TGAATATTTGTATTCAGCAAGAGATTATAAAAAAAATGAATGCTATGCTTGACAAAATGCCTCAAGATGC
CCGGAAAATACTCTCTAACCAAGAAATGTTAATTCTCATGAGTAGTATGGGAGAAAGGATTTTAGATGCT
GGAGATTATGACTTACAGGTAGGCATTGTAGAAGCTTTGTGTAGAATGACCACAGAAAAACAAAGACAAG
AACTGGCACATCAGTGGTTTTCAATGGATTTTATTGCTAAGGCATTTAAAAGAATTAAGGACTCTGAATT
TGAAACAGATTGCAGGATATTTCTCAACCTTGTAAATGGCATGCTTGGAGACAAAAGAAGGGTCTTTACA
TTTCCTTGTTTATCAGCATTTCTTGATAAATATGAGCTGCAAATACCATCAGATGAAAAACTTGAGGAAT
TTTGGATTGATTTTAATCTTGGGAGTCAGACTCTCTCATTCTACATTGCTGGAGATAATGATGATCATCA
ATGGGAAGCAGTTACTGTGCCAGAGGAAAAAGTACAAATATACAGCATTGAAGTGAGAGAATCAAAGAAG
CTACTGACAATAATTCTGAAAAATACAGTAAAAATTAGCAAAAGAGAAGGGAAAGAATTGCTTTTGTATT
TTGACGCATCACTAGAAATCACTAATGTAACTCAAAAAATTTTTGGTGCAACTAAACATAGGGAATCTAT
CAGAAAACAAGGTATTTCAGTTGCCAAAACGTCGCTGCATATACTTTTTGACGCAAGTGGATCACAGATT
CTAGTGCCAGAAAGTCAAATCTCACCAGTCGGAGAAGAGCTCGTTAGTTTAAAGGAAAAATCAAAGTCCC
CAAAGGAATTTGCTAAACCTTCAAAATATATCAAAAACAGTGACAAAGGGAATAGAAATAATAGTCAGCT
TGAGAAAACTACTCCTAGCAAAAGAAAAATGTCTGAAGCATCAATGATTGTTTCTGGTGCAGATAGATAC
ACTATGAGAAGTCCAGTGCTTTTCAGCAACACATCAATACCACCACGAAGAAGAAGAATTAAACCACCAC
TGCAAATGACGAGCTCTGCAGAGAAACCTAGTGTTTCTCAAACATCAGAAAATAGAGTGGATAATGCTGC
ATCACTGAAATCTAGATCATCAGAAGGAAGACATAGAAGAGATAATATAGACAAACATATCAAAACTGCT
AAGTGTGTAGAAAACACAGAAAATAAGAATGTTGAATTCCCAAACCAAAATTTTAGTGAACTCCAGGATG
TTATACCAGATTCACAGGCAGCGGAAAAAAGAGATCATACTATATTACCTGGTGTTTTAGACAACATCTG
TGGAAATAAAATACACAGCAAATGGGCATGTTGGACACCTGTAACAAACATTGAACTATGTAATAACCAA
AGAGCAAGTACTTCGTCAGGAGACACATTGAATCAAGATATTGTTATAAATAAAAAACTTACTAAACAAA
AATCATCCTCTTCAATATCTGATCATAATTCTGAAGGAACAGGAAAAGTGAAATATAAGAAAGAACAAAC
CGACCATATCAAAATAGATAAAGCAGAAGTAGAAGTTTGCAAGAAACACAATCAGCAACAAAATCATCCT
AAATATTCAGGGCAGAAAAATACTGAAAATGCCAAGCAGAGTGATTGGCCTGTTGAATCTGAAACTACTT
TTAAATCGGTTCTCCTAAATAAGACAATTGAAGAATCGCTGATATATAGGAAGAAATACATATTGTCAAA
AGATGTGAATACTGCTACTTGCGATAAAAATCCATCTGCTAGCAAAAATGTGCAAAGTCATAGAAAAGCA
GAGAAAGAATTGACTTCTGAGCTTAATTCCTGGGATTCGAAACAAAAAAAAATGAGAGAAAAGTCAAAAG
GGAAAGAATTTACCAATGTAGCAGAATCCTTGATAAGCCAAATCAATAAAAGATACAAAACAAAAGATGA
CATCAAGTCTACAAGAAAATTAAAGGAGTCTTTGATTAACAGTGGTTTTTCAAACAAACCTGTTGTACAA
CTCAGTAAGGAAAAAGTTCAGAAAAAAAGCTACAGAAAACTGAAGACTACCTTTGTTAATGTTACTTCTG
AATGCCCAGTGAATGATGTTTACAATTTTAATTTGAATGGAGCTGATGACCCTATCATAAAACTTGGAAT
CCAAGAGTTTCAAGCTACAGCTAAAGAAGCTTGTGCGGATAGGTCAATTAGATTGGTAGGTCCAAGGAAT
CATGATGAACTTAAATCTTCTGTCAAAACAAAAGATAAAAAAATTATAACAAATCATCAAAAGAAAAATC
TGTTTAGTGATACTGAAACAGAGTACAGATGTGATGACAGCAAGACTGATATTAGCTGGCTAAGAGAACC
GAAATCAAAACCACAGCTAATAGACTATAGCAGAAATAAAAATGTGAAGAATCATAAAAGTGGAAAATCA
AGATCATCCTTGGAAAAGGGACAGCCAAGCTCTAAAATGACACCCAGTAAAAATATCACAAAAAAGATGG
ACAAGACAATTCCGGAAGGAAGAATCAGACTTCCACGAAAAGCAACCAAAACAAAAAAAAACTATAAAGA
TCTCTCAAATTCAGAATCAGAGTGTGAACAAGAATTTTCACATTCATTTAAAGAGAACATACCAGTAAAG
GAGGAGAATATCCATTCCAGAATGAAAACGGTAAAGCTACCAAAGAAACAACAGAAAGTCTTCTGTGCTG
AAACAGAAAAGGAACTATCAAAACAATGGAAAAACTCATCTCTACTAAAAGATGCTATACGAGATAATTG
CCTTGACTTATCTCCCAGATCTTTATCTGGCAGTCCATCATCTATAGAAGTAACGAGATGTATAGAGAAA
ATAACAGAAAAGGATTTTACTCAGGATTATGACTGCATAACAAAATCTATATCACCTTATCCAAAAACTT
CATCACTTGAATCCTTAAATAGTAACAGTGGAGTTGGAGGTACAATAAAGTCACCCAAAAACAATGAGAA
AAACTTCCTGTGTGCAAGTGAAAGTTGTTCACCAATTCCACGACCACTGTTTTTGCCCAGACATACTCCA
ACTAAGAGTAATACTATTGTAAATAGAAAAAAAATAAGTTCTCTGGTACTTACACAAGAAACACAAAACA
GTAACAGCTATTCAGATGTAAGCAGTTATAGTTCAGAAGAACGGTTTATGGAAATTGAATCTCCACATAT
CAATGAAAATTATATACAAAGCAAAAGAGAGGAAAGTCATTTAGCATCTTCATTATCCAAGTCTAGTGAA
GGAAGAGAGAAAACGTGGTTTGACATGCCCTGTGATGCTACTCATGTATCAGGCCCCACCCAACATCTTA
GTCGCAAAAGAATATATATAGAAGATAATCTAAGTAATTCCAATGAAGTAGAAATGGAAGAGAAAGGAGA
AAGGAGAGCAAACTTGCTTCCCAAAAAACTGTGTAAAATTGAAGATGCAGATCATCATATCCACAAAATG
TCTGAAAGTGTATCTTCATTATCAACAAATGACTTTTCTATTCCTTGGGAGACCTGGCAAAATGAATTTG
CAGGGATAGAGATGACTTATGAGACTTACGAGAGGCTCAATTCAGAATTTAAGAGAAGGAATAATATCCG
ACATAAAATGTTGAGTTATTTTACTACGCAGTCTTGGAAAACAGCTCAGCAACATCTGAGAACAATGAAT
CATCAAAGTCAGGACTCTAGGATTAAAAAACTTGATAAATTCCAATTCATTATCATAGAGGAGCTGGAGA
ATTTTGAAAAAGATTCACAGTCTTTAAAAGATTTGGAAAAGGAATTTGTGGACTTTTGGGAAAAGATATT
TCAGAAGTTCAGTGCATATCAAAAAAGCGAACAACAGAGGCTTCATCTTTTGAAAACTTCATTGGCTAAA
AGTGTCTTCTGTAATACTGATAGTGAAGAAACTGTTTTTACATCCGAGATGTGTTTGATGAAAGAAGATA
TGAAAGTGCTGCAAGACAGGCTTCTTAAGGACATGCTAGAAGAGGAGCTTCTTAATGTACGCAGAGAACT
GATGTCAGTATTCATGTCTCATGAAAGAAATGCTAATGTGTGA

Translation (1530 aa):
MPIRPDLQQLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKVDNLICRELNKEDIHNVSAIL
VSVGRCGKNISVLGQAGLLTMIKQGLIQKMVAWFEKSKDIIQSQGNSKDEAVLNMIEDLVDLLLVIHDVS
DEGKKQVVESFVPRICSLVIDSRVNICIQQEIIKKMNAMLDKMPQDARKILSNQEMLILMSSMGERILDA
GDYDLQVGIVEALCRMTTEKQRQELAHQWFSMDFIAKAFKRIKDSEFETDCRIFLNLVNGMLGDKRRVFT
FPCLSAFLDKYELQIPSDEKLEEFWIDFNLGSQTLSFYIAGDNDDHQWEAVTVPEEKVQIYSIEVRESKK
LLTIILKNTVKISKREGKELLLYFDASLEITNVTQKIFGATKHRESIRKQGISVAKTSLHILFDASGSQI
LVPESQISPVGEELVSLKEKSKSPKEFAKPSKYIKNSDKGNRNNSQLEKTTPSKRKMSEASMIVSGADRY
TMRSPVLFSNTSIPPRRRRIKPPLQMTSSAEKPSVSQTSENRVDNAASLKSRSSEGRHRRDNIDKHIKTA
KCVENTENKNVEFPNQNFSELQDVIPDSQAAEKRDHTILPGVLDNICGNKIHSKWACWTPVTNIELCNNQ
RASTSSGDTLNQDIVINKKLTKQKSSSSISDHNSEGTGKVKYKKEQTDHIKIDKAEVEVCKKHNQQQNHP
KYSGQKNTENAKQSDWPVESETTFKSVLLNKTIEESLIYRKKYILSKDVNTATCDKNPSASKNVQSHRKA
EKELTSELNSWDSKQKKMREKSKGKEFTNVAESLISQINKRYKTKDDIKSTRKLKESLINSGFSNKPVVQ
LSKEKVQKKSYRKLKTTFVNVTSECPVNDVYNFNLNGADDPIIKLGIQEFQATAKEACADRSIRLVGPRN
HDELKSSVKTKDKKIITNHQKKNLFSDTETEYRCDDSKTDISWLREPKSKPQLIDYSRNKNVKNHKSGKS
RSSLEKGQPSSKMTPSKNITKKMDKTIPEGRIRLPRKATKTKKNYKDLSNSESECEQEFSHSFKENIPVK
EENIHSRMKTVKLPKKQQKVFCAETEKELSKQWKNSSLLKDAIRDNCLDLSPRSLSGSPSSIEVTRCIEK
ITEKDFTQDYDCITKSISPYPKTSSLESLNSNSGVGGTIKSPKNNEKNFLCASESCSPIPRPLFLPRHTP
TKSNTIVNRKKISSLVLTQETQNSNSYSDVSSYSSEERFMEIESPHINENYIQSKREESHLASSLSKSSE
GREKTWFDMPCDATHVSGPTQHLSRKRIYIEDNLSNSNEVEMEEKGERRANLLPKKLCKIEDADHHIHKM
SESVSSLSTNDFSIPWETWQNEFAGIEMTYETYERLNSEFKRRNNIRHKMLSYFTTQSWKTAQQHLRTMN
HQSQDSRIKKLDKFQFIIIEELENFEKDSQSLKDLEKEFVDFWEKIFQKFSAYQKSEQQRLHLLKTSLAK
SVFCNTDSEETVFTSEMCLMKEDMKVLQDRLLKDMLEEELLNVRRELMSVFMSHERNANV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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