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Report for CCDS13547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13547.1 Public Homo sapiens 20 UCKL1 24 110 108 CCDS HistoryNCBI Gene:54963Re-query CCDS DB by CCDS ID:13547.1Re-query CCDS DB by GeneID:54963See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13547.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354216.11 ENSP00000346155.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354216.11Link to Ensembl Protein Viewer:ENSP00000346155.6Re-query CCDS DB by Nucleotide ID:ENST00000354216Re-query CCDS DB by Protein ID:ENSP00000346155
Original member Current member NCBI NM_017859.4 NP_060329.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017859.4Link to Protein Sequence:NP_060329.2Re-query CCDS DB by Nucleotide ID:NM_017859Re-query CCDS DB by Protein ID:NP_060329Link to BLAST:NP_060329.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060329.2 548 Q9NWZ5-1 548 100% 0 0

Chromosomal Locations for CCDS 13547.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 63939976 63940055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63940150 63940306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63940378 63940485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63940594 63940716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63940794 63940856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63940950 63941043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63941110 63941208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63943653 63943669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63944397 63944458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63944545 63944734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63945651 63945722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63945805 63945975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63946161 63946267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63946453 63946643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63956260 63956372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGGCTGCGCCCCCGGCCCGCGCGGACGCTGATCCTTCGCCCACGTCGCCACCTACGGCCCGAGACACAC
CAGGCCGGCAGGCTGAGAAAAGCGAGACCGCGTGCGAGGACCGCAGCAATGCAGAGTCCCTGGACAGGCT
CCTGCCACCTGTGGGCACTGGGCGCTCTCCCCGGAAGCGGACCACCAGCCAGTGCAAGTCAGAGCCTCCC
CTGCTGCGTACAAGCAAGCGTACCATCTACACCGCCGGGCGGCCGCCCTGGTACAATGAACACGGCACGC
AATCCAAAGAGGCCTTCGCCATCGGCTTGGGAGGCGGCAGTGCCTCTGGGAAGACCACTGTGGCCAGAAT
GATCATCGAGGCCCTGGATGTGCCCTGGGTGGTCTTGCTGTCCATGGACTCCTTCTACAAGGTGCTGACT
GAGCAGCAGCAGGAACAGGCCGCACACAACAACTTCAACTTCGACCACCCAGATGCCTTTGACTTCGACC
TCATCATTTCCACCCTCAAGAAGCTGAAGCAGGGGAAGAGTGTCAAGGTGCCCATTTATGACTTCACCAC
GCACAGCCGGAAGAAGGACTGGAAAACACTGTATGGTGCAAACGTCATCATCTTTGAGGGCATCATGGCC
TTTGCTGACAAGACACTGTTGGAGCTCCTGGACATGAAGATCTTTGTGGACACAGACTCCGACATCCGCC
TGGTACGGCGGCTGCGCCGGGACATCAGTGAGCGCGGCCGGGACATCGAGGGTGTCATCAAGCAGTACAA
CAAGTTTGTCAAGCCCTCCTTCGACCAGTACATCCAGCCCACCATGCGCCTGGCAGACATCGTGGTCCCC
AGAGGGAGCGGCAACACGGTGGCCATCGACCTGATTGTGCAGCACGTGCACAGCCAGCTGGAGGAGCGTG
AACTCAGCGTCAGGGCTGCGCTGGCCTCGGCACACCAGTGCCACCCGCTGCCCCGGACGCTGAGCGTCCT
GAAGAGCACGCCGCAGGTACGGGGCATGCACACCATCATCAGGGACAAGGAGACCAGTCGCGACGAGTTC
ATCTTCTACTCCAAGAGACTGATGCGGCTGCTCATCGAGCACGCGCTCTCCTTCCTGCCCTTTCAGGACT
GCGTCGTACAGACCCCGCAGGGGCAGGACTATGCGGGCAAGTGCTATGCGGGGAAGCAGATCACCGGTGT
GTCCATTCTGCGCGCCGGTGAAACCATGGAGCCCGCGCTGCGCGCTGTGTGCAAAGACGTGCGCATCGGC
ACCATCCTCATCCAGACCAACCAGCTTACCGGGGAGCCCGAGCTCCACTACCTGAGGCTGCCCAAGGACA
TCAGCGATGACCACGTGATCCTCATGGACTGCACCGTGTCCACGGGCGCGGCGGCCATGATGGCAGTGCG
CGTGCTCCTGGACCACGACGTGCCTGAGGACAAGATCTTTTTGCTGTCGCTGCTCATGGCAGAGATGGGC
GTGCACTCAGTGGCCTATGCATTTCCGCGAGTGAGAATCATCACCACGGCGGTGGACAAGCGGGTCAATG
ACCTTTTCCGCATCATCCCAGGCATTGGGAACTTTGGCGACCGCTACTTTGGGACAGACGCGGTCCCCGA
TGGCAGTGACGAGGAGGAAGTGGCCTACACGGGTTAG

Translation (548 aa):
MAAPPARADADPSPTSPPTARDTPGRQAEKSETACEDRSNAESLDRLLPPVGTGRSPRKRTTSQCKSEPP
LLRTSKRTIYTAGRPPWYNEHGTQSKEAFAIGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLT
EQQQEQAAHNNFNFDHPDAFDFDLIISTLKKLKQGKSVKVPIYDFTTHSRKKDWKTLYGANVIIFEGIMA
FADKTLLELLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPSFDQYIQPTMRLADIVVP
RGSGNTVAIDLIVQHVHSQLEERELSVRAALASAHQCHPLPRTLSVLKSTPQVRGMHTIIRDKETSRDEF
IFYSKRLMRLLIEHALSFLPFQDCVVQTPQGQDYAGKCYAGKQITGVSILRAGETMEPALRAVCKDVRIG
TILIQTNQLTGEPELHYLRLPKDISDDHVILMDCTVSTGAAAMMAVRVLLDHDVPEDKIFLLSLLMAEMG
VHSVAYAFPRVRIITTAVDKRVNDLFRIIPGIGNFGDRYFGTDAVPDGSDEEEVAYTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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