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Report for CCDS13661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13661.1 Public Homo sapiens 21 PSMG1 24 110 108 CCDS HistoryNCBI Gene:8624Re-query CCDS DB by CCDS ID:13661.1Re-query CCDS DB by GeneID:8624See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13661.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380900.2 ENSP00000370286.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380900.2Link to Ensembl Protein Viewer:ENSP00000370286.2Re-query CCDS DB by Nucleotide ID:ENST00000380900Re-query CCDS DB by Protein ID:ENSP00000370286
Original member Current member NCBI NM_203433.2 NP_982257.1 Accepted alive Link to Nucleotide Sequence:NM_203433.2Link to Protein Sequence:NP_982257.1Re-query CCDS DB by Nucleotide ID:NM_203433Re-query CCDS DB by Protein ID:NP_982257Link to BLAST:NP_982257.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_982257.1 267 O95456-2 267 100% 0 0

Chromosomal Locations for CCDS 13661.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 39175590 39175664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39177435 39177571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39178449 39178647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39180285 39180436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39181772 39181878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39183252 39183385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGGCGGCCACGTTCTTCGGAGAGGTGGTGAAGGCGCCGTGCCGAGCTGGGACTGAGGACGAAGAGGAGG
AGGAGGAGGGGCGGAGGGAGACGCCCGAGGACAGGGAGGTGCGTCTGCAGCTGGCGCGGAAGAGGGAAGT
GCGGCTCCTTCGAAGACAAACAAAAACATCTTTGGAAGTTTCTTTGCTAGAAAAATATCCGTGCTCCAAG
TTTATAATTGCTATAGGAAATAATGCAGTAGCATTTCTGTCATCATTTGTTATGAATTCAGGAGTCTGGG
AGGAAGTTGGTTGTGCTAAACTCTGGAATGAATGGTGTAGAACAACAGACACTACACATCTGTCCTCCAC
AGAGGCTTTTTGTGTGTTTTATCATCTAAAATCCAATCCCTCGGTTTTTGGCTCTTGTCCAAGGAAGAAC
ATGCAGATAACTATTCTCACATGTCGACATGTTACCGATTATAAAACCTCAGAATCCACCGGCAGCCTTC
CTTCTCCTTTCCTGAGAGCCCTAAAAACACAGAATTTCAAAGACTCGGCGTGTTGTCCATTGCTAGAACA
ACCGAATATAGTACACGACCTTCCTGCAGCAGTTCTAAGCTACTGTCAAGTATGGAAAATCCCAGCAATT
CTGTACTTGTGTTATACTGATGTGATGAAATTAGACCTAATCACAGTGGAAGCTTTTAAGCCTATACTTT
CTACCAGAAGCTTGAAGGGTTTGGTTAAGAATATTCCCCAAAGCACTGAGATACTAAAGAAATTGATGAC
AACAAATGAGATTCAGAGTAACATTTATACATGA

Translation (267 aa):
MAATFFGEVVKAPCRAGTEDEEEEEEGRRETPEDREVRLQLARKREVRLLRRQTKTSLEVSLLEKYPCSK
FIIAIGNNAVAFLSSFVMNSGVWEEVGCAKLWNEWCRTTDTTHLSSTEAFCVFYHLKSNPSVFGSCPRKN
MQITILTCRHVTDYKTSESTGSLPSPFLRALKTQNFKDSACCPLLEQPNIVHDLPAAVLSYCQVWKIPAI
LYLCYTDVMKLDLITVEAFKPILSTRSLKGLVKNIPQSTEILKKLMTTNEIQSNIYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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