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Report for CCDS13665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13665.1 Public Homo sapiens 21 LCA5L 24 110 108 CCDS HistoryNCBI Gene:150082Re-query CCDS DB by CCDS ID:13665.1Re-query CCDS DB by GeneID:150082See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13665.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288350.8 ENSP00000288350.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000288350.8Link to Ensembl Protein Viewer:ENSP00000288350.3Re-query CCDS DB by Nucleotide ID:ENST00000288350Re-query CCDS DB by Protein ID:ENSP00000288350
Original member Current member EBI ENST00000358268.6 ENSP00000351008.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358268.6Link to Ensembl Protein Viewer:ENSP00000351008.2Re-query CCDS DB by Nucleotide ID:ENST00000358268Re-query CCDS DB by Protein ID:ENSP00000351008
Original member Current member EBI ENST00000380671.6 ENSP00000370046.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380671.6Link to Ensembl Protein Viewer:ENSP00000370046.2Re-query CCDS DB by Nucleotide ID:ENST00000380671Re-query CCDS DB by Protein ID:ENSP00000370046
Original member Current member NCBI NM_001384285.1 NP_001371214.1 Accepted alive Link to Nucleotide Sequence:NM_001384285.1Link to Protein Sequence:NP_001371214.1Re-query CCDS DB by Nucleotide ID:NM_001384285Re-query CCDS DB by Protein ID:NP_001371214Link to BLAST:NP_001371214.1
Original member Current member NCBI NM_001384286.1 NP_001371215.1 Accepted alive Link to Nucleotide Sequence:NM_001384286.1Link to Protein Sequence:NP_001371215.1Re-query CCDS DB by Nucleotide ID:NM_001384286Re-query CCDS DB by Protein ID:NP_001371215Link to BLAST:NP_001371215.1
Original member Current member NCBI NM_001384287.1 NP_001371216.1 Accepted alive Link to Nucleotide Sequence:NM_001384287.1Link to Protein Sequence:NP_001371216.1Re-query CCDS DB by Nucleotide ID:NM_001384287Re-query CCDS DB by Protein ID:NP_001371216Link to BLAST:NP_001371216.1
Original member Current member NCBI NM_001384288.1 NP_001371217.1 Accepted alive Link to Nucleotide Sequence:NM_001384288.1Link to Protein Sequence:NP_001371217.1Re-query CCDS DB by Nucleotide ID:NM_001384288Re-query CCDS DB by Protein ID:NP_001371217Link to BLAST:NP_001371217.1
Original member Current member NCBI NM_001384289.1 NP_001371218.1 Accepted alive Link to Nucleotide Sequence:NM_001384289.1Link to Protein Sequence:NP_001371218.1Re-query CCDS DB by Nucleotide ID:NM_001384289Re-query CCDS DB by Protein ID:NP_001371218Link to BLAST:NP_001371218.1
Original member Current member NCBI NM_001384291.1 NP_001371220.1 Accepted alive Link to Nucleotide Sequence:NM_001384291.1Link to Protein Sequence:NP_001371220.1Re-query CCDS DB by Nucleotide ID:NM_001384291Re-query CCDS DB by Protein ID:NP_001371220Link to BLAST:NP_001371220.1
Original member Current member NCBI NM_152505.4 NP_689718.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152505.4Link to Protein Sequence:NP_689718.1Re-query CCDS DB by Nucleotide ID:NM_152505Re-query CCDS DB by Protein ID:NP_689718Link to BLAST:NP_689718.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371214.1 670 O95447 670 100% 0 0
NP_001371215.1 670 O95447 670 100% 0 0
NP_001371216.1 670 O95447 670 100% 0 0
NP_001371217.1 670 O95447 670 100% 0 0
NP_001371218.1 670 O95447 670 100% 0 0
NP_001371220.1 670 O95447 670 100% 0 0
NP_689718.1 670 O95447 670 100% 0 0

Chromosomal Locations for CCDS 13665.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 39405882 39406612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39409979 39410096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39410264 39410367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39411718 39411802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39420706 39420843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39422976 39423490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39428172 39428493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGTCTTTGGCTGATCTAACAAAAACAAATATAGATGAGCATTTCTTCGGCGTGGCATTAGAAAACAATA
GGAGGTCTGCAGCATGCAAGAGAAGCCCAGGCACAGGCGATTTTTCACGGAACAGTAATGCTTCCAATAA
GAGTGTTGATTATAGCAGATCTCAGTGCTCCTGTGGAAGTTTAAGTTCTCAGTATGATTATTCAGAAGAC
TTTCTCTGTGATTGTTCAGAAAAGGCTATTAATAGAAATTATTTAAAGCAGCCTGTGGTAAAAGAAAAGG
AGAAGAAAAAGTATAATGTTTCTAAAATCTCCCAATCTAAAGGCCAGAAGGAAATATCAGTTGAAAAAAA
GCACACCTGGAATGCATCACTCTTTAATTCTCAAATCCATATGATTGCCCAAAGAAGAGATGCTATGGCT
CATCGAATACTCTCAGCAAGGCTTCATAAAATTAAAGGACTAAAAAATGAATTAGCTGATATGCATCATA
AATTGGAAGCCATCCTTACAGAAAACCAATTTTTGAAACAACTTCAGCTTAGGCATTTGAAAGCTATAGG
AAAATATGAGAATTCACAAAATAATCTACCTCAAATTATGGCTAAACATCAGAATGAAGTAAAAAATTTA
AGGCAACTACTTAGGAAATCCCAGGAAAAGGAAAGAACTCTATCTAGGAAACTTAGAGAAACTGACAGCC
AGTTACTGAAGACTAAAGATATCTTGCAGGCACTGCAGAAACTTTCTGAAGACAAAAACCTTGCAGAAAG
GGAAGAACTCACTCATAAATTATCTATTATCACAACAAAAATGGACGCAAATGACAAAAAAATACAGAGC
TTGGAAAAACAACTGAGGTTGAACTGCAGAGCCTTTAGCCGGCAGCTGGCTATTGAGACTCGGAAGACTT
TAGCAGCTCAGACAGCTACCAAGACTCTGCAGGTGGAAGTAAAACACCTTCAACAAAAACTTAAGGAAAA
GGATCGTGAGCTTGAAATTAAAAACATCTATAGTCATCGAATACTTAAAAATTTACATGACACAGAGGAC
TATCCAAAAGTTTCTTCAACAAAATCAGTCCAAGCAGACAGAAAAATTTTGCCATTCACAAGTATGAGAC
ACCAGGGAACCCAAAAATCAGATGTTCCACCTTTGACAACTAAGGGTAAAAAGGCAACAGGAAACATCGA
TCATAAAGAAAAATCAACTGAAATAAATCATGAAATTCCTCACTGTGTGAATAAACTACCAAAGCAAGAG
GATTCTAAGAGAAAATATGAAGATTTATCAGGGGAAGAGAAACATTTGGAAGTCCAAATACTGCTGGAGA
ATACTGGAAGACAAAAAGACAAAAAAGAAGACCAAGAAAAGAAAAACATTTTTGTGAAAGAAGAGCAAGA
ACTACCACCAAAAATAATTGAAGTTATTCATCCTGAAAGAGAAAGCAATCAAGAAGATGTTCTAGTAAGA
GAAAAGTTTAAAAGAAGCATGCAGAGAAATGGTGTGGATGACACACTTGGCAAAGGCACTGCTCCCTACA
CGAAAGGCCCCCTCAGACAAAGAAGACATTACTCATTCACAGAAGCAACTGAAAACCTGCATCATGGGCT
TCCTGCTTCAGGGGGGCCAGCCAATGCCGGCAACATGAGGTACAGTCATAGTACAGGCAAGCATCTCAGT
AACAGAGAGGAAATGGAGCTAGAGCATTCTGACAGTGGGTATGAGCCCTCATTTGGTAAGTCTTCCAGAA
TAAAAGTGAAGGATACAACTTTCAGAGATAAGAAAAGCAGTCTCATGGAAGAACTCTTTGGATCAGGCTA
TGTCTTGAAAACTGACCAATCAAGTCCTGGTGTTGCAAAAGGCTCAGAGGAGCCTTTGCAAAGTAAGGAG
TCGCATCCCCTGCCTCCCAGTCAGGCCTCCACCAGCCATGCTTTCGGAGACTCTAAAGTAACTGTGGTAA
ATTCTATTAAGCCATCGTCACCTACAGAAGGAAAAAGAAAAATAATTATTTAA

Translation (670 aa):
MSLADLTKTNIDEHFFGVALENNRRSAACKRSPGTGDFSRNSNASNKSVDYSRSQCSCGSLSSQYDYSED
FLCDCSEKAINRNYLKQPVVKEKEKKKYNVSKISQSKGQKEISVEKKHTWNASLFNSQIHMIAQRRDAMA
HRILSARLHKIKGLKNELADMHHKLEAILTENQFLKQLQLRHLKAIGKYENSQNNLPQIMAKHQNEVKNL
RQLLRKSQEKERTLSRKLRETDSQLLKTKDILQALQKLSEDKNLAEREELTHKLSIITTKMDANDKKIQS
LEKQLRLNCRAFSRQLAIETRKTLAAQTATKTLQVEVKHLQQKLKEKDRELEIKNIYSHRILKNLHDTED
YPKVSSTKSVQADRKILPFTSMRHQGTQKSDVPPLTTKGKKATGNIDHKEKSTEINHEIPHCVNKLPKQE
DSKRKYEDLSGEEKHLEVQILLENTGRQKDKKEDQEKKNIFVKEEQELPPKIIEVIHPERESNQEDVLVR
EKFKRSMQRNGVDDTLGKGTAPYTKGPLRQRRHYSFTEATENLHHGLPASGGPANAGNMRYSHSTGKHLS
NREEMELEHSDSGYEPSFGKSSRIKVKDTTFRDKKSSLMEELFGSGYVLKTDQSSPGVAKGSEEPLQSKE
SHPLPPSQASTSHAFGDSKVTVVNSIKPSSPTEGKRKIII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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