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Report for CCDS13878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13878.1 Public Homo sapiens 22 SEC14L4 24 110 108 CCDS HistoryNCBI Gene:284904Re-query CCDS DB by CCDS ID:13878.1Re-query CCDS DB by GeneID:284904See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13878.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255858.12 ENSP00000255858.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000255858.12Link to Ensembl Protein Viewer:ENSP00000255858.7Re-query CCDS DB by Nucleotide ID:ENST00000255858Re-query CCDS DB by Protein ID:ENSP00000255858
Original member Current member NCBI NM_174977.4 NP_777637.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174977.4Link to Protein Sequence:NP_777637.1Re-query CCDS DB by Nucleotide ID:NM_174977Re-query CCDS DB by Protein ID:NP_777637Link to BLAST:NP_777637.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777637.1 406 Q9UDX3-1 406 100% 0 0

Chromosomal Locations for CCDS 13878.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 30490107 30490246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30491573 30491742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30491834 30491973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30492049 30492155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30492474 30492557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30494150 30494210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30494866 30494961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30495254 30495442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30495583 30495642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30495928 30495971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30503677 30503752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30505558 30505611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGAGCAGCCGAGTCGGGGACCTGAGCCCCCAGCAGCAGGAAGCGCTGGCCAGGTTCCGGGAGAACCTCC
AGGACCTGCTGCCCATACTGCCCAATGCTGATGACTACTTCCTCCTGCGCTGGCTGCGAGCTCGAAACTT
TGACCTGCAGAAATCCGAAGACATGCTCCGAAGGCACATGGAGTTCCGGAAGCAACAAGACCTGGACAAC
ATTGTCACATGGCAGCCCCCTGAGGTCATCCAGCTGTATGACTCGGGTGGTCTTTGTGGCTACGACTACG
AAGGCTGCCCTGTGTACTTCAACATCATTGGGTCCCTCGACCCCAAGGGTCTCCTGCTGTCAGCCTCCAA
GCAGGATATGATCCGGAAGCGCATCAAAGTCTGTGAGCTGCTGTTGCATGAGTGTGAGCTGCAAACTCAG
AAGCTGGGCAGGAAGATCGAGATGGCGCTGATGGTGTTTGACATGGAGGGGCTGAGCCTGAAACACCTGT
GGAAGCCAGCTGTGGAGGTCTACCAGCAGTTTTTTAGCATCCTGGAAGCAAATTATCCTGAGACCCTGAA
GAATTTAATTGTTATTCGAGCCCCAAAACTGTTCCCCGTGGCCTTCAACTTGGTCAAGTCGTTCATGAGT
GAGGAGACACGCAGGAAGATTGTGATTCTGGGAGACAACTGGAAGCAGGAGCTGACAAAATTCATCAGCC
CCGACCAGCTGCCTGTGGAGTTTGGGGGGACCATGACTGACCCCGATGGCAACCCCAAGTGCCTGACCAA
GATCAACTATGGGGGTGAGGTGCCCAAGAGCTACTACCTGTGCGAGCAGGTGAGGCTGCAGTATGAGCAC
ACGAGGTCCGTGGGCCGCGGCTCCTCCCTGCAGGTGGAGAACGAGATCCTGTTCCCGGGCTGTGTGCTCA
GGTGGCAGTTTGCTTCAGATGGTGGGGACATCGGCTTTGGGGTTTTCCTGAAGACCAAGATGGGGGAGCA
GCAGAGTGCTAGGGAGATGACGGAGGTGCTGCCCAGCCAGCGCTACAATGCCCACATGGTGCCTGAGGAT
GGGAGCCTCACCTGCCTCCAGGCTGGCGTCTATGTCCTGCGCTTCGACAACACCTACAGCCGGATGCATG
CCAAGAAGCTCAGCTACACTGTGGAGGTGCTGCTTCCCGACAAGGCCTCTGAGGAGACGCTGCAGAGTCT
CAAGGCGATGAGACCCTCCCCAACACAGTGA

Translation (406 aa):
MSSRVGDLSPQQQEALARFRENLQDLLPILPNADDYFLLRWLRARNFDLQKSEDMLRRHMEFRKQQDLDN
IVTWQPPEVIQLYDSGGLCGYDYEGCPVYFNIIGSLDPKGLLLSASKQDMIRKRIKVCELLLHECELQTQ
KLGRKIEMALMVFDMEGLSLKHLWKPAVEVYQQFFSILEANYPETLKNLIVIRAPKLFPVAFNLVKSFMS
EETRRKIVILGDNWKQELTKFISPDQLPVEFGGTMTDPDGNPKCLTKINYGGEVPKSYYLCEQVRLQYEH
TRSVGRGSSLQVENEILFPGCVLRWQFASDGGDIGFGVFLKTKMGEQQSAREMTEVLPSQRYNAHMVPED
GSLTCLQAGVYVLRFDNTYSRMHAKKLSYTVEVLLPDKASEETLQSLKAMRPSPTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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