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Report for CCDS13888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13888.1 Public Homo sapiens 22 SMTN 24 110 108 CCDS HistoryNCBI Gene:6525Re-query CCDS DB by CCDS ID:13888.1Re-query CCDS DB by GeneID:6525See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13888.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333137.12 ENSP00000329532.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333137.12Link to Ensembl Protein Viewer:ENSP00000329532.7Re-query CCDS DB by Nucleotide ID:ENST00000333137Re-query CCDS DB by Protein ID:ENSP00000329532
Original member Current member NCBI NM_001382638.1 NP_001369567.1 Accepted alive Link to Nucleotide Sequence:NM_001382638.1Link to Protein Sequence:NP_001369567.1Re-query CCDS DB by Nucleotide ID:NM_001382638Re-query CCDS DB by Protein ID:NP_001369567Link to BLAST:NP_001369567.1
Original member Current member NCBI NM_001382639.1 NP_001369568.1 Accepted alive Link to Nucleotide Sequence:NM_001382639.1Link to Protein Sequence:NP_001369568.1Re-query CCDS DB by Nucleotide ID:NM_001382639Re-query CCDS DB by Protein ID:NP_001369568Link to BLAST:NP_001369568.1
Original member Current member NCBI NM_001382640.1 NP_001369569.1 Accepted alive Link to Nucleotide Sequence:NM_001382640.1Link to Protein Sequence:NP_001369569.1Re-query CCDS DB by Nucleotide ID:NM_001382640Re-query CCDS DB by Protein ID:NP_001369569Link to BLAST:NP_001369569.1
Original member Current member NCBI NM_001382641.1 NP_001369570.1 Accepted alive Link to Nucleotide Sequence:NM_001382641.1Link to Protein Sequence:NP_001369570.1Re-query CCDS DB by Nucleotide ID:NM_001382641Re-query CCDS DB by Protein ID:NP_001369570Link to BLAST:NP_001369570.1
Original member Current member NCBI NM_134269.3 NP_599031.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_134269.3Link to Protein Sequence:NP_599031.1Re-query CCDS DB by Nucleotide ID:NM_134269Re-query CCDS DB by Protein ID:NP_599031Link to BLAST:NP_599031.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001369567.1 915 P53814-5 915 100% 0 0
NP_001369568.1 915 P53814-5 915 100% 0 0
NP_001369569.1 915 P53814-5 915 100% 0 0
NP_001369570.1 915 P53814-5 915 100% 0 0
NP_599031.1 915 P53814-5 915 100% 0 0

Chromosomal Locations for CCDS 13888.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 31083259 31083309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31087965 31088113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31088513 31088606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31088699 31088777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31088872 31088969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31089699 31090019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31090108 31090180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31090808 31090879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31090961 31091482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31091675 31091847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31095303 31095455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31095534 31095609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31096733 31096897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31096998 31097060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31097269 31097338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31098667 31098840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31099062 31099179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31099745 31099896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31100885 31101029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2748 nt):
ATGGCGGACGAGGCCTTAGCTGGGCTGGATGAGGGAGCCCTTCGGAAGCTGCTGGAGGTCACAGCAGATC
TG
GCAGAGCGGCGGCGCATCCGCTCAGCCATCCGGGAACTGCAGCGGCAGGAGCTGGAGCGCGAGGAGGA
G
GCCCTGGCATCCAAGCGTTTCCGTGCCGAGCGGCAGGACAACAAGGAGAACTGGCTGCACTCTCAGCAG
CGG
GAAGCTGAGCAGCGGGCTGCCCTGGCACGGCTGGCAGGGCAGCTGGAGTCCATGAACGATGTGGAGG
AA
TTGACTGCACTGTTGCGAAGCGCTGGTGAGTATGAGGAGCGCAAGCTGATCCGAGCTGCCATCCGCCG
T
GTACGGGCTCAGGAGATTGAGGCTGCCACCTTGGCTGGGAGGTTGTACAGCGGGCGTCCCAACAGTGGC
TCA
AGAGAGGACAGCAAGGGGCTAGCGGCACACAGGCTGGAACAGTGTGAGGTGCCAGAGCGAGAGGAAC
AG
GAACAGCAGGCAGAGGTTTCAAAGCCAACCCCCACCCCTGAAGGCACCAGCCAGGATGTGACCACAGT
G
ACACTCCTGCTGCGAGCCCCACCTGGGAGCACATCCAGCTCACCTGCCTCACCCAGCAGTTCACCCACC
CCT
GCCTCTCCTGAGCCTCCATTGGAGCCTGCCGAGGCCCAGTGCCTTACAGCTGAGGTTCCAGGCAGCC
CA
GAGCCACCCCCCAGCCCACCCAAGACCACCAGCCCTGAGCCTCAGGAGTCTCCAACGCTCCCCAGCAC
T
GAGGGCCAGGTGGTCAACAAGCTTCTGTCTGGCCCCAAAGAGACCCCTGCTGCCCAGAGCCCCACCAGA
GGC
CCCTCTGACACCAAGAGAGCAGACGTGGCTGGACCCCGACCCTGCCAACGCTCCCTGTCGGTGCTCA
GC
CCCCGCCAACCAGCCCAGAACCGAGAGTCCACCCCCCTTGCCAGCGGACCTTCCTCATTCCAGCGGGC
T
GGCTCTGTGCGGGATCGTGTCCACAAGTTCACATCTGATTCTCCTATGGCTGCTAGGCTCCAGGATGGC
ACA
CCCCAGGCTGCCCTAAGTCCCCTGACCCCCGCAAGGCTCCTGGGCCCCTCCCTCACCAGCACCACCC
CT
GCCTCCTCCTCCAGCGGCTCCTCCTCTCGGGGCCCCAGTGATACCTCCTCCCGGTTCAGCAAGGAGCA
A
CGAGGAGTAGCCCAGCCCCTGGCCCAGCTTCGAAGCTGCCCCCAGGAGGAGGGCCCCAGGGGGCGGGGC
TTG
GCTGCTAGGCCCCTTGAAAACAGAGCAGGGGGGCCTGTGGCACGTTCAGAGGAGCCTGGTGCCCCGC
TG
CCCGTGGCCGTCGGCACTGCCGAGCCAGGGGGCAGTATGAAGACCACATTCACCATCGAGATCAAGGA
C
GGCCGTGGCCAGGCCTCCACAGGCCGGGTGCTGCTGCCCACAGGCAACCAGAGGGCAGAACTGACACTG
GGG
CTGCGGGCGCCCCCGACCCTACTCAGCACCAGTAGTGGGGGCAAGAGCACCATCACCCGTGTCAACA
GC
CCTGGGACCCTGGCTCGGCTGGGCAGTGTCACTCATGTCACCAGCTTCAGCCATGCCCCCCCCAGTAG
C
CGAGGAGGCTGCAGCATCAAGATGGAAGCAGAGCCAGCAGAGCCTCTCGCTGCAGCAGTGGAAGCGGCC
AAT
GGGGCTGAGCAGACCCGAGTGAACAAAGCACCAGAAGGGCGGAGCCCTCTGAGCGCTGAGGAGCTGA
TG
ACTATTGAGGATGAAGGAGTCTTGGACAAGATGCTGGATCAGAGCACGGACTTTGAAGAGCGGAAGCT
C
ATCCGGGCTGCACTTCGTGAGCTCCGACAAAGGAAGAGAGACCAGCGGGACAAGGAGCGGGAACGGCGG
CTG
CAGGAGGCACGGGGCCGGCCAGGGGAGGGGCGCGGCAACACAGCCACTGAGACCACCACGAGGCACA
GC
CAGCGGGCAGCTGATGGCTCTGCTGTCAGCACTGTTACCAAGACTGAGCGGCTCGTCCACTCCAATGA
T
GGCACACGGACGGCCCGCACCACCACAGTGGAGTCGAGTTTCGTGAGGCGCTCGGAGAATGGCAGTGGC
AGC
ACCATGATGCAAACCAAGACCTTCTCCTCTTCCTCCTCATCCAAGAAGATGGGCAGCATCTTCGACC
GC
GAGGACCAGGCCAGCCCACGGGCCGGCAGCCTGGCGGCGCTCGAGAAACGGCAGGCCGAGAAGAAGAA
A
GAGCTGATGAAGGCGCAGAGTCTGCCCAAGACCTCAGCCTCCCAGGCGCGCAAGGCCATGATTGAGAAG
CTG
GAGAAGGAGGGCGCGGCCGGCAGCCCTGGCGGACCCCGCGCAGCCGTGCAGCGATCCACCAGCTTCG
GG
GTCCCCAACGCCAACAGCATCAAGCAGATGCTGCTGGACTGGTGTCGAGCCAAGACTCGCGGCTACGA
G
CACGTCGACATCCAGAACTTCTCCTCCAGCTGGAGTGATGGGATGGCCTTCTGTGCCCTGGTGCACAAC
TTC
TTCCCTGAGGCCTTCGACTATGGGCAGCTTAGCCCTCAGAACCGACGCCAGAACTTCGAGGTGGCCT
TC
TCATCTGCGGAGACCCATGCGGACTGCCCGCAGCTCCTGGATACAGAGGACATGGTGCGGCTTCGAGA
G
CCTGACTGGAAGTGCGTGTACACGTACATCCAGGAATTCTACCGCTGTCTGGTCCAGAAGGGGCTGGTA
AAA
ACCAAAAAGTCCTAA


Translation (915 aa):
MADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQDNKENWLHSQQ
R
EAEQRAALARLAGQLESMNDVEELTAL
LRSAGEYEERKLIRAAIRRVRAQEIEAATLAGRLYSGRPNSG
S
REDSKGLAAHRLEQCE
VPEREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPT
P
ASPEPPLEPAEAQCLTAEVPGSPEPPPSPPKTTSPEPQESPTLPSTEGQVVNK
LLSGPKETPAAQSPTR
G
PSDTKRA
DVAGPRPCQRSLSVLSPRQPAQNRESTPLASGPSSFQRAGSVRDRVHKFTSDSPMAARLQDG
T
PQAALSPLTPARLLGPSLTSTTPASSSSGSSSRGPSDTSSRFSKEQRGVAQPLAQLRSCPQEEGPRGRG
L
AARPLENRAGGPVARSEEPGAPLPVAVGTAEPGGSMKTTFTIEIKDGRGQASTGRVLLPTGNQRA
ELTL
G
LRAPPTLLSTSSGGKSTITRVNSPGTLARLGSVTHVTSFSHAPPSSRGGCSIK
MEAEPAEPLAAAVEAA
N
GAEQTRVNKAPEGRSPLSAEELMTIEDEGVLDKM
LDQSTDFEERKLIRAALRELRQRKRDQRDKERERR
L
QEARGRPGEGRGNTATETTTRHSQRAADGSAVSTVTKTERLVHS
NDGTRTARTTTVESSFVRRSENGSG
S
TMMQTKTFSSSSSSKKMG
SIFDREDQASPRAGSLAALEKRQAEKKKELMKAQSLPKTSASQARKAMIEK
L
EKEGAA
GSPGGPRAAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHN
F
FPEAFDYGQLSPQNRRQNFEVAFSSA
ETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLVQKGLV
K
TKKS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser