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Report for CCDS13989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13989.1 Public Homo sapiens 22 SYNGR1 24 110 108 CCDS HistoryNCBI Gene:9145Re-query CCDS DB by CCDS ID:13989.1Re-query CCDS DB by GeneID:9145See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13989.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328933.10 ENSP00000332287.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328933.10Link to Ensembl Protein Viewer:ENSP00000332287.5Re-query CCDS DB by Nucleotide ID:ENST00000328933Re-query CCDS DB by Protein ID:ENSP00000332287
Original member Current member NCBI NM_004711.5 NP_004702.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004711.5Link to Protein Sequence:NP_004702.2Re-query CCDS DB by Nucleotide ID:NM_004711Re-query CCDS DB by Protein ID:NP_004702Link to BLAST:NP_004702.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004702.2 233 O43759-1 233 100% 0 0

Chromosomal Locations for CCDS 13989.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 39350011 39350109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39374316 39374553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39376052 39376197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39381696 39381914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGGAAGGGGGTGCGTACGGAGCGGGCAAAGCCGGGGGCGCCTTCGACCCCTACACCCTGGTCCGGCAGC
CGCACACCATCCTGCGCGTCGTGTCTTGGCTGTTCTCCATAGTGGTGTTCGGCTCCATCGTGAACGAGGG
CTACCTCAACAGCGCCTCCGAGGGGGAGGAGTTCTGCATCTACAACCGCAACCCCAACGCCTGCAGCTAT
GGCGTGGCCGTGGGCGTGCTCGCCTTCCTCACCTGCCTGCTGTACCTGGCCCTGGACGTGTACTTCCCGC
AGATCAGCAGCGTCAAGGACCGCAAGAAAGCCGTCCTGTCCGACATCGGTGTCTCGGCCTTCTGGGCTTT
CCTCTGGTTCGTGGGATTCTGCTACCTGGCCAACCAGTGGCAGGTCTCCAAGCCCAAGGACAACCCACTG
AACGAAGGGACGGACGCAGCCCGGGCCGCCATCGCCTTCTCCTTTTTCTCCATCTTCACCTGGGCGGGCC
AGGCTGTGCTGGCCTTCCAGCGGTACCAGATTGGCGCCGACTCGGCCCTCTTCTCCCAGGACTACATGGA
CCCCAGCCAGGACTCCAGCATGCCTTACGCGCCCTACGTGGAGCCCACTGGGCCGGATCCCGCCGGTATG
GGCGGCACCTACCAGCAGCCGGCCAACACCTTCGACACCGAGCCCCAGGGCTACCAGTCGCAGGGCTACT
GA

Translation (233 aa):
MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSY
GVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPL
NEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSALFSQDYMDPSQDSSMPYAPYVEPTGPDPAGM
GGTYQQPANTFDTEPQGYQSQGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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