NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14050.1 Public Homo sapiens 22 EFCAB6 24 110 108 CCDS HistoryNCBI Gene:64800Re-query CCDS DB by CCDS ID:14050.1Re-query CCDS DB by GeneID:64800See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14050.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396231.6 ENSP00000379533.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396231.6Link to Ensembl Protein Viewer:ENSP00000379533.2Re-query CCDS DB by Nucleotide ID:ENST00000396231Re-query CCDS DB by Protein ID:ENSP00000379533
Original member Current member NCBI NM_198856.3 NP_942153.1 Accepted alive Link to Nucleotide Sequence:NM_198856.3Link to Protein Sequence:NP_942153.1Re-query CCDS DB by Nucleotide ID:NM_198856Re-query CCDS DB by Protein ID:NP_942153Link to BLAST:NP_942153.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_942153.1 1349 Q5THR3-2 1349 100% 0 0

Chromosomal Locations for CCDS 14050.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 43528853 43528975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43530815 43530964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43534688 43534872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43537377 43537545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43540127 43540357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43554869 43555096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43576297 43576488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43580464 43580659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43590074 43590229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43600069 43600263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43608482 43608600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43615826 43615922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43626447 43626679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43632105 43632238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43635102 43635216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43667104 43667272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43668872 43669045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43671973 43672133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43672246 43672305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43677996 43678163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43683747 43683855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43687471 43687581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43711475 43711623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43716848 43716972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43731699 43731811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43735857 43735993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43755766 43755816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4050 nt):
ATGAATTGCTGCCGCACATTAAGAGAACTTGAAATCCAAGTGGGAGAAAAGGTTTTCAAAAACATTAAGA
CTGTTATGAAAGCCTTTGAGCTCATTGATGTTAACAAGACTGGACTGGTTCGACCGCAGGAGCTAAGAAG
GGTTCTGGAGACCTTCTGTATGAAGTTAAGAGACGAGGAATACGAAAAGTTTTCGAAACACTACAACATC
CACAAGGATACTGCAGTAGATTACAACGTGTTTTTGAAGAATCTCAGCATAAATAACGACTTGAACCTTA
GATATTGTATGGGAAATCAAGAGGTCTCGTTGGAGAATCAACAAGCCAAAAATTCCAAAAAGGAACGTTT
GCTAGGTTCTGCATCATCTGAAGATATCTGGAGAAACTACTCCTTGGATGAAATTGAGAGGAACTTTTGT
CTACAACTTTCGAAGTCTTATGAAAAGGTTGAAAAGGCCCTCAGTGCAGGGGACCCCTGTAAAGGTGGCT
ACGTGTCTTTTAATTATCTAAAGATTGTCCTCGACACTTTTGTATACCAAATACCAAGAAGAATTTTTAT
CCAGTTAATGAAAAGATTTGGACTTAAAGCCACCACTAAAATCAATTGGAAGCAATTTCTAACATCATTT
CATGAGCCTCAGGGGTTGCAAGTTAGCAGTAAAGGTCCCCTGACAAAAAGAAATAGCATCAACTCTAGAA
ATGAATCTCACAAGGAAAACATCATCACAAAGTTATTTAGACACACTGAAGATCACTCTGCGTCACTGAA
GAAAGCATTACTGATAATCAACACTAAACCCGATGGACCGATAACAAGAGAAGAATTTCGATATATTCTA
AATTGCATGGCTGTAAAACTAAGCGATTCAGAATTCAAAGAACTAATGCAAATGCTTGACCCTGGGGACA
CTGGAGTGGTCAACACCAGCATGTTTATTGATCTGATTGAAGAGAACTGTAGGATGAGAAAGACATCTCC
CTGTACAGATGCTAAGACACCTTTCCTCCTGGCCTGGGATTCAGTGGAAGAAATTGTTCATGATACAATT
ACTAGGAACCTACAAGCTTTTTATAACATGCTACGCTCATATGACCTTGGAGACACAGGGCGCATTGGCC
GAAATAATTTCAAGAAAATCATGCACGTCTTCTGTCCATTTTTAACGAATGCACATTTCATAAAACTCTG
CAGTAAGATTCAGGACATTGGTTCAGGAAGAATCCTTTACAAGAAACTTTTGGCATGCATAGGAATTGAT
GGCCCACCCACTGTCTCTCCAGTTCTTGTTCCAAAGGATCAGCTGTTAAGTGAACATTTACAAAAAGATG
AACAGCAGCAGCCAGATCTTTCTGAGAGAACCAAGCTCACGGAGGATAAAACCACCCTGACCAAGAAGAT
GACCACAGAAGAAGTGATTGAAAAATTCAAAAAGTGTATACAGCAGCAGGACCCGGCATTCAAAAAACGA
TTTCTTGACTTCAGCAAGGAGCCTAATGGAAAAATTAACGTGCATGACTTTAAGAAGGTACTGGAAGACA
CTGGGATGCCCATGGACGATGATCAGTATGCCCTGCTGACCACTAAAATAGGCTTCGAGAAGGAAGGGAT
GAGCTATCTTGATTTTGCAGCAGGATTTGAAGATCCTCCAATGAGAGGGCCGGAAACCACTCCGCCGCAG
CCTCCAACTCCTTCAAAAAGTTACGTGAACAGCCACTTTATCACCGCAGAAGAATGCCTGAAGCTTTTCC
CTAGGAGGCTGAAGGAGTCATTCCGGGACCCCTACTCTGCCTTCTTTAAAACAGATGCTGACAGGGATGG
CATAATCAACATGCATGACCTTCACAGACTGCTCCTGCATCTACTGCTTAATCTCAAAGACGACGAGTTT
GAGCGCTTCCTTGGCCTTCTTGGCTTGAGACTTAGTGTCACTTTAAATTTTCGGGAATTTCAAAATTTGT
GTGAGAAGAGACCATGGAGAACAGATGAAGCGCCTCAAAGACTCATTAGACCAAAACAGAAGGTTGCGGA
TTCAGAACTAGCTTGTGAGCAGGCTCATCAGTATCTTGTTACCAAAGCAAAAAACAGATGGTCAGACTTG
TCTAAGAATTTTCTAGAAACCGATAATGAGGGCAATGGCATTCTTCGACGCCGGGACATAAAGAACGCAC
TGTACGGTTTTGATATTCCCCTCACACCAAGAGAGTTTGAAAAGCTTTGGGCAAGATACGACACCGAGGG
AAAAGGGCACATTACTTACCAGGAATTTTTACAGAAATTGGGTATTAACTATTCGCCTGCTGTCCATCGG
CCCTGTGCAGAGGATTATTTCAACTTCATGGGTCATTTTACAAAGCCACAGCAGCTACAGGAAGAGATGA
AGGAGCTGCAGCAGAGCACAGAGAAGGCTGTGGCAGCCAGGGATAAGCTTATGGACCGCCATCAAGATAT
CAGCAAAGCATTCACCAAAACTGATCAATCCAAAACCAACTACATATCCATATGCAAGATGCAGGAAGTG
CTGGAAGAATGTGGATGTTCTCTTACCGAAGGGGAGCTGACCCATCTGCTAAACAGTTGGGGAGTCAGCC
GGCATGATAATGCTATCAATTACCTCGACTTCCTGAGAGCAGTGGAGAACAGCAAGTCAACAGGAGCTCA
GCCCAAGGAAAAAGAAGAGAGCATGCCAATCAATTTTGCAACGCTGAATCCACAGGAGGCTGTGAGGAAG
ATCCAGGAAGTAGTTGAGTCCTCCCAGCTGGCTTTGTCCACGGCATTTTCTGCATTGGATAAAGAGGATA
CAGGATTTGTAAAGGCTACAGAATTCGGACAAGTTCTTAAGGATTTCTGTTACAAACTAACGGACAATCA
GTATCATTATTTTTTGAGGAAACTAAGAATTCATCTAACCCCCTATATAAATTGGAAATATTTTCTCCAG
AACTTTAGCTGTTTCCTTGAGGAGACAGCTGATGAGTGGGCTGAGAAAATGCCCAAAGGCCCGCCGCCTA
CCTCTCCCAAGGCCACAGCCGACAGAGACATCCTGGCTCGCCTCCACAAAGCAGTGACTTCCCATTACCA
TGCCATCACCCAGGAGTTTGAGAATTTTGACACCATGAAAACGAACACCATCTCCAGAGAGGAGTTTAGG
GCCATTTGTAATCGCCGCGTCCAAATCCTGACGGACGAACAGTTTGACAGACTCTGGAACGAGATGCCAG
TCAATGCCAAGGGGAGGCTGAAATACCCGGACTTCCTGAGCAGGTTCAGTTCCGAGACAGCAGCCACACC
AATGGCCACTGGTGACTCGGCCGTGGCCCAGAGAGGGAGCAGTGTCCCTGACGTCTCGGAAGGCACCAGA
TCTGCCCTCTCATTGCCCACTCAGGAGCTGAGACCAGGGTCAAAGTCGCAGAGCCACCCCTGTACTCCAG
CGAGCACCACCGTGATCCCGGGCACTCCACCCTTGCAGAACTGTGATCCCATAGAGAGCAGGCTCCGGAA
GAGAATCCAGGGCTGCTGGCGCCAGCTCCTGAAAGAATGCAAGGAGAAGGACGTGGCCAGACAGGGGGAC
ATCAACGCCTCCGATTTCCTGGCTCTTGTGGAGAAATTCAACCTGGACATAAGCAAAGAGGAGTGTCAGC
AGCTCATTATAAAATACGACTTAAAGAGCAACGGGAAATTTGCATACTGTGACTTCATTCAGAGCTGTGT
CCTCCTGCTAAAAGCAAAGGAAAGCTCACTGATGCACAGGATGAAGATCCAGAATGCACACAAGATGAAA
GAAGCCGGCGCGGAGACGCCATCTTTTTACTCTGCTCTGCTGCGTATTCAGCCCAAAATTGTGCACTGCT
GGAGGCCAATGCGGCGCACGTTCAAAAGCTATGATGAGGCTGGAACAGGGCTGCTAAGCGTCGCAGATTT
CAGGACGGTCCTGAGACAGTACAGCATCAACCTCTCTGAGGAAGAGTTCTTCCATATTCTGGAGTATTAC
GATAAGACGCTGTCTTCAAAAATCTCCTACAACGACTTCCTCCGGGCATTCCTCCAGTAG

Translation (1349 aa):
MNCCRTLRELEIQVGEKVFKNIKTVMKAFELIDVNKTGLVRPQELRRVLETFCMKLRDEEYEKFSKHYNI
HKDTAVDYNVFLKNLSINNDLNLRYCMGNQEVSLENQQAKNSKKERLLGSASSEDIWRNYSLDEIERNFC
LQLSKSYEKVEKALSAGDPCKGGYVSFNYLKIVLDTFVYQIPRRIFIQLMKRFGLKATTKINWKQFLTSF
HEPQGLQVSSKGPLTKRNSINSRNESHKENIITKLFRHTEDHSASLKKALLIINTKPDGPITREEFRYIL
NCMAVKLSDSEFKELMQMLDPGDTGVVNTSMFIDLIEENCRMRKTSPCTDAKTPFLLAWDSVEEIVHDTI
TRNLQAFYNMLRSYDLGDTGRIGRNNFKKIMHVFCPFLTNAHFIKLCSKIQDIGSGRILYKKLLACIGID
GPPTVSPVLVPKDQLLSEHLQKDEQQQPDLSERTKLTEDKTTLTKKMTTEEVIEKFKKCIQQQDPAFKKR
FLDFSKEPNGKINVHDFKKVLEDTGMPMDDDQYALLTTKIGFEKEGMSYLDFAAGFEDPPMRGPETTPPQ
PPTPSKSYVNSHFITAEECLKLFPRRLKESFRDPYSAFFKTDADRDGIINMHDLHRLLLHLLLNLKDDEF
ERFLGLLGLRLSVTLNFREFQNLCEKRPWRTDEAPQRLIRPKQKVADSELACEQAHQYLVTKAKNRWSDL
SKNFLETDNEGNGILRRRDIKNALYGFDIPLTPREFEKLWARYDTEGKGHITYQEFLQKLGINYSPAVHR
PCAEDYFNFMGHFTKPQQLQEEMKELQQSTEKAVAARDKLMDRHQDISKAFTKTDQSKTNYISICKMQEV
LEECGCSLTEGELTHLLNSWGVSRHDNAINYLDFLRAVENSKSTGAQPKEKEESMPINFATLNPQEAVRK
IQEVVESSQLALSTAFSALDKEDTGFVKATEFGQVLKDFCYKLTDNQYHYFLRKLRIHLTPYINWKYFLQ
NFSCFLEETADEWAEKMPKGPPPTSPKATADRDILARLHKAVTSHYHAITQEFENFDTMKTNTISREEFR
AICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFSSETAATPMATGDSAVAQRGSSVPDVSEGTR
SALSLPTQELRPGSKSQSHPCTPASTTVIPGTPPLQNCDPIESRLRKRIQGCWRQLLKECKEKDVARQGD
INASDFLALVEKFNLDISKEECQQLIIKYDLKSNGKFAYCDFIQSCVLLLKAKESSLMHRMKIQNAHKMK
EAGAETPSFYSALLRIQPKIVHCWRPMRRTFKSYDEAGTGLLSVADFRTVLRQYSINLSEEEFFHILEYY
DKTLSSKISYNDFLRAFLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH