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Report for CCDS14085.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14085.2 Public Homo sapiens 22 PANX2 24 110 108 CCDS HistoryNCBI Gene:56666Re-query CCDS DB by CCDS ID:14085.2Re-query CCDS DB by GeneID:56666See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14085.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395842.3 ENSP00000379183.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395842.3Link to Ensembl Protein Viewer:ENSP00000379183.2Re-query CCDS DB by Nucleotide ID:ENST00000395842Re-query CCDS DB by Protein ID:ENSP00000379183
Original member Current member NCBI NM_052839.4 NP_443071.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052839.4Link to Protein Sequence:NP_443071.2Re-query CCDS DB by Nucleotide ID:NM_052839Re-query CCDS DB by Protein ID:NP_443071Link to BLAST:NP_443071.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443071.2 677 Q96RD6-3 677 100% 0 0

Chromosomal Locations for CCDS 14085.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 50170731 50170956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50176939 50178402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50178934 50179277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGCACCACCTCCTGGAGCAGTCGGCGGACATGGCGACCGCGCTGCTGGCGGGAGAGAAGCTGCGGGAGC
TGATCCTGCCGGGCGCGCAGGACGACAAGGCGGGCGCGCTGGCCGCGCTGCTTCTGCAGCTGAAGCTGGA
GCTGCCGTTCGACCGGGTGGTCACCATCGGCACCGTGCTGGTGCCCATCCTGCTGGTCACCCTGGTCTTC
ACCAAGAACTTCGCAGAGGAACCCATTTACTGTTACACCCCGCACAACTTCACGCGCGACCAGGCGCTGT
ACGCCCGCGGCTACTGCTGGACGGAGCTGCGGGACGCGCTGCCCGGCGTGGACGCCAGCCTGTGGCCGTC
GCTGTTTGAGCACAAGTTCCTGCCCTACGCGCTGCTGGCCTTCGCCGCCATCATGTACGTGCCCGCGCTG
GGCTGGGAGTTCCTGGCCTCCACGCGCCTCACCTCCGAGCTCAACTTCCTGCTGCAGGAGATCGACAACT
GTTACCACCGGGCGGCCGAGGGCCGCGCGCCCAAGATCGAGAAGCAGATCCAGTCCAAGGGCCCGGGCAT
CACGGAGCGCGAGAAGCGCGAGATCATCGAGAACGCGGAGAAGGAGAAGAGCCCGGAGCAGAACCTGTTC
GAGAAGTACCTGGAGCGCCGCGGCCGCAGCAACTTCCTGGCCAAGCTGTACCTGGCGCGGCACGTGCTGA
TCCTGCTGCTGAGCGCCGTGCCCATCTCCTACCTGTGCACCTACTACGCCACGCAGAAGCAGAACGAGTT
CACCTGCGCGCTGGGCGCGTCCCCGGACGGGGCGGCAGGTGCGGGGCCCGCGGTGCGCGTGAGCTGCAAG
CTCCCGTCCGTGCAACTGCAGCGCATCATCGCGGGCGTGGACATCGTGCTGCTGTGCGTCATGAACCTCA
TCATCCTCGTCAACCTCATCCACCTCTTCATCTTCCGCAAGAGCAACTTCATCTTCGACAAGCTGCACAA
GGTGGGCATCAAGACGCGCCGGCAGTGGCGCCGCTCGCAGTTCTGCGACATCAACATCCTGGCCATGTTC
TGCAACGAGAACCGCGACCACATCAAGTCGCTCAACCGGCTGGACTTCATCACCAACGAGAGCGACCTCA
TGTACGACAACGTGGTCCGGCAGCTGCTGGCGGCGCTGGCGCAGTCCAACCACGACGCCACCCCCACGGT
GCGCGACTCGGGGGTGCAGACCGTGGACCCCAGCGCCAACCCCGCCGAGCCCGACGGCGCCGCCGAGCCG
CCCGTGGTCAAGCGGCCGCGCAAGAAGATGAAGTGGATCCCCACCAGCAACCCGCTTCCGCAGCCCTTCA
AGGAGCCGCTGGCCATCATGCGCGTGGAGAACAGCAAGGCGGAGAAGCCGAAGCCCGCGCGCAGGAAGAC
GGCCACGGACACGCTGATCGCGCCGCTGCTGGACCGCTCCGCCCACCACTACAAGGGCGGAGGGGGCGAC
CCGGGCCCCGGCCCCGCCCCTGCCCCCGCCCCGCCGCCCGCCCCTGACAAGAAGCACGCGCGCCACTTCT
CCCTGGACGTGCACCCCTACATCCTCGGCACCAAGAAGGCCAAGGCCGAGGCGGTGCCCGCCGCCCTGCC
CGCCTCCCGGAGCCAGGAGGGGGGCTTCCTGTCCCAGGCGGAGGACTGTGGGCTAGGCCTGGCCCCGGCG
CCCATCAAAGATGCTCCGCTCCCCGAGAAGGAAATCCCGTACCCCACAGAGCCAGCCCGGGCAGGGCTTC
CCTCGGGGGGCCCGTTCCACGTCCGCTCACCTCCCGCCGCCCCTGCTGTGGCCCCTCTGACACCAGCCAG
CCTGGGCAAGGCGGAGCCCCTCACCATCCTGAGCCGAAACGCCACACACCCGCTGCTGCACATCAACACG
CTGTACGAGGCCCGGGAGGAGGAGGACGGGGGCCCCCGCCTGCCGCAGGACGTGGGGGACCTCATCGCCA
TCCCTGCCCCACAGCAGATCCTCATCGCCACCTTCGACGAGCCGAGAACGGTCGTGAGTACTGTGGAGTT
TTGA

Translation (677 aa):
MHHLLEQSADMATALLAGEKLRELILPGAQDDKAGALAALLLQLKLELPFDRVVTIGTVLVPILLVTLVF
TKNFAEEPIYCYTPHNFTRDQALYARGYCWTELRDALPGVDASLWPSLFEHKFLPYALLAFAAIMYVPAL
GWEFLASTRLTSELNFLLQEIDNCYHRAAEGRAPKIEKQIQSKGPGITEREKREIIENAEKEKSPEQNLF
EKYLERRGRSNFLAKLYLARHVLILLLSAVPISYLCTYYATQKQNEFTCALGASPDGAAGAGPAVRVSCK
LPSVQLQRIIAGVDIVLLCVMNLIILVNLIHLFIFRKSNFIFDKLHKVGIKTRRQWRRSQFCDINILAMF
CNENRDHIKSLNRLDFITNESDLMYDNVVRQLLAALAQSNHDATPTVRDSGVQTVDPSANPAEPDGAAEP
PVVKRPRKKMKWIPTSNPLPQPFKEPLAIMRVENSKAEKPKPARRKTATDTLIAPLLDRSAHHYKGGGGD
PGPGPAPAPAPPPAPDKKHARHFSLDVHPYILGTKKAKAEAVPAALPASRSQEGGFLSQAEDCGLGLAPA
PIKDAPLPEKEIPYPTEPARAGLPSGGPFHVRSPPAAPAVAPLTPASLGKAEPLTILSRNATHPLLHINT
LYEAREEEDGGPRLPQDVGDLIAIPAPQQILIATFDEPRTVVSTVEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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