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Report for CCDS1449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1449.1 Public Homo sapiens 1 CNTN2 24 110 108 CCDS HistoryNCBI Gene:6900Re-query CCDS DB by CCDS ID:1449.1Re-query CCDS DB by GeneID:6900See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1449.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331830.7 ENSP00000330633.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331830.7Link to Ensembl Protein Viewer:ENSP00000330633.4Re-query CCDS DB by Nucleotide ID:ENST00000331830Re-query CCDS DB by Protein ID:ENSP00000330633
Original member Current member EBI ENST00000639302.1 ENSP00000491671.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639302.1Link to Ensembl Protein Viewer:ENSP00000491671.1Re-query CCDS DB by Nucleotide ID:ENST00000639302Re-query CCDS DB by Protein ID:ENSP00000491671
Original member Current member EBI ENST00000640326.1 ENSP00000492495.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640326.1Link to Ensembl Protein Viewer:ENSP00000492495.1Re-query CCDS DB by Nucleotide ID:ENST00000640326Re-query CCDS DB by Protein ID:ENSP00000492495
Original member Current member EBI ENST00000638378.1 ENSP00000492617.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638378.1Link to Ensembl Protein Viewer:ENSP00000492617.1Re-query CCDS DB by Nucleotide ID:ENST00000638378Re-query CCDS DB by Protein ID:ENSP00000492617
Original member Current member NCBI NM_001346083.2 NP_001333012.1 Accepted alive Link to Nucleotide Sequence:NM_001346083.2Link to Protein Sequence:NP_001333012.1Re-query CCDS DB by Nucleotide ID:NM_001346083Re-query CCDS DB by Protein ID:NP_001333012Link to BLAST:NP_001333012.1
Original member Current member NCBI NM_005076.5 NP_005067.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005076.5Link to Protein Sequence:NP_005067.1Re-query CCDS DB by Nucleotide ID:NM_005076Re-query CCDS DB by Protein ID:NP_005067Link to BLAST:NP_005067.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333012.1 1040 Q02246 1040 100% 0 0
NP_005067.1 1040 Q02246 1040 100% 0 0

Chromosomal Locations for CCDS 1449.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 205053186 205053255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205057921 205058065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205058181 205058356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205058568 205058663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205059084 205059293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205059583 205059682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205061245 205061420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205061865 205062001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205062440 205062569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205064322 205064472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205064623 205064750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205065087 205065262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205065789 205065909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205066441 205066599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205067101 205067250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205069491 205069561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205069827 205070061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205070426 205070538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205071947 205072133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205072483 205072595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205073068 205073236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205073656 205073765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3123 nt):
ATGGGGACAGCCACCAGGAGGAAGCCACACCTGCTGCTGGTAGCTGCTGTGGCCCTTGTCTCCTCTTCAG
CTTGGAGTTCAGCCCTGGGATCCCAAACCACCTTCGGGCCTGTCTTTGAAGACCAGCCCCTCAGTGTGCT
ATTCCCAGAGGAGTCCACGGAGGAGCAGGTGTTGCTGGCATGCCGCGCCCGGGCCAGCCCTCCAGCCACC
TATCGGTGGAAGATGAATGGTACCGAGATGAAGCTGGAGCCAGGTTCCCGTCACCAGCTGGTGGGGGGCA
ACCTGGTCATCATGAACCCCACCAAGGCACAGGATGCCGGGGTCTACCAGTGCCTGGCCTCCAACCCAGT
GGGCACCGTTGTCAGCAGGGAGGCCATCCTCCGCTTCGGCTTTCTGCAGGAATTCTCCAAGGAGGAGCGA
GACCCAGTGAAAGCTCATGAAGGCTGGGGGGTGATGTTGCCCTGTAACCCACCTGCCCACTACCCAGGCT
TGTCCTACCGCTGGCTCCTCAACGAGTTCCCCAACTTCATCCCGACGGACGGGCGTCACTTCGTGTCCCA
GACCACAGGGAACCTGTACATTGCCCGAACCAATGCCTCAGACCTGGGCAACTACTCCTGTTTGGCCACC
AGCCACATGGACTTCTCCACCAAGAGCGTCTTCAGCAAGTTTGCTCAGCTCAACCTGGCTGCTGAAGATA
CCCGGCTCTTTGCACCCAGCATCAAGGCCCGGTTCCCAGCAGAGACCTATGCACTGGTGGGGCAGCAGGT
CACCCTGGAGTGCTTCGCCTTTGGGAACCCTGTCCCCCGGATCAAGTGGCGCAAAGTGGACGGCTCCCTG
TCCCCGCAGTGGACCACAGCTGAGCCCACCCTGCAGATCCCCAGCGTCAGCTTTGAGGATGAGGGCACCT
ACGAGTGTGAGGCGGAGAACTCCAAGGGCCGAGACACCGTGCAGGGCCGCATCATCGTGCAGGCTCAGCC
TGAGTGGCTAAAAGTGATCTCGGACACAGAGGCTGACATTGGCTCCAACCTGCGTTGGGGCTGTGCAGCC
GCCGGCAAGCCCCGGCCTACAGTGCGCTGGCTGCGGAACGGGGAGCCTCTGGCCTCCCAGAACCGGGTGG
AGGTGTTGGCTGGGGACCTGCGGTTCTCCAAGCTGAGCCTGGAAGACTCGGGCATGTACCAGTGTGTGGC
AGAGAATAAGCACGGTACCATCTACGCCAGCGCCGAGCTAGCCGTGCAAGCACTCGCCCCTGACTTCAGG
CTGAATCCCGTGAGGCGTCTGATCCCCGCGGCCCGCGGGGGAGAGATCCTTATCCCCTGCCAGCCCCGGG
CAGCTCCAAAGGCCGTGGTGCTCTGGAGCAAAGGCACGGAGATTTTGGTCAACAGCAGCAGAGTGACTGT
AACTCCAGATGGCACCTTGATCATAAGAAACATCAGCCGGTCAGATGAAGGCAAATACACCTGCTTTGCT
GAGAACTTCATGGGCAAAGCCAACAGCACTGGAATCCTATCTGTGCGAGATGCAACCAAAATCACTCTAG
CCCCCTCAAGTGCCGACATCAACTTGGGTGACAACCTGACCCTACAGTGCCATGCCTCCCACGACCCCAC
CATGGACCTCACCTTCACCTGGACCCTGGACGACTTCCCCATCGACTTTGATAAGCCTGGAGGGCACTAC
CGGAGAACTAATGTGAAGGAGACCATTGGGGATCTGACCATCCTGAACGCCCAGCTGCGCCATGGGGGGA
AGTACACGTGCATGGCCCAGACGGTGGTGGACAGCGCGTCCAAGGAGGCCACAGTCCTGGTCCGAGGTCC
GCCAGGTCCCCCAGGAGGTGTGGTGGTGAGGGACATTGGCGACACCACCATCCAGCTCAGCTGGAGCCGT
GGCTTCGACAACCACAGCCCCATCGCTAAGTACACCCTGCAAGCTCGCACTCCACCTGCAGGGAAGTGGA
AGCAGGTTCGGACCAATCCTGCAAACATCGAGGGCAATGCCGAGACTGCACAGGTGCTGGGCCTCACCCC
CTGGATGGACTATGAGTTCCGGGTCATAGCCAGCAACATTCTGGGCACTGGGGAGCCTAGTGGGCCCTCC
AGCAAAATCCGGACCAGGGAAGCAGCCCCCTCGGTGGCACCCTCAGGACTCAGCGGAGGAGGTGGAGCCC
CCGGAGAGCTCATCGTCAACTGGACGCCCATGTCACGGGAGTACCAGAACGGAGACGGCTTCGGCTACCT
GCTGTCCTTCCGCAGGCAGGGCAGCACTCACTGGCAGACCGCCCGGGTGCCTGGCGCCGATGCCCAGTAC
TTTGTCTACAGCAACGAGAGCGTCCGGCCCTACACGCCCTTTGAGGTCAAGATCCGCAGCTACAACCGCC
GCGGGGATGGGCCCGAGAGCCTCACTGCACTCGTGTACTCAGCTGAGGAAGAGCCCAGGGTGGCCCCTAC
CAAGGTGTGGGCCAAAGGGGTCTCATCCTCAGAGATGAACGTGACCTGGGAACCCGTGCAGCAGGACATG
AATGGTATCCTCCTGGGGTATGAGATCCGCTACTGGAAAGCTGGGGACAAAGAAGCAGCTGCGGACCGAG
TGAGGACAGCAGGGCTGGACACCAGTGCCCGAGTCAGCGGCCTGCATCCCAACACCAAGTACCATGTGAC
CGTGAGGGCCTACAACCGGGCTGGCACTGGGCCTGCCAGCCCTTCTGCCAACGCCACGACCATGAAGCCC
CCTCCGCGGCGACCTCCTGGCAACATCTCCTGGACTTTCTCAAGCTCTAGTCTTAGCATTAAGTGGGACC
CTGTGGTCCCTTTCCGAAATGAGTCTGCAGTCACCGGCTATAAGATGCTGTACCAGAATGACTTACACCT
GACTCCCACGCTCCACCTCACCGGCAAGAACTGGATAGAAATCCCAGTGCCTGAAGACATTGGCCATGCC
CTGGTACAAATTCGGACCACAGGGCCCGGAGGGGATGGGATCCCTGCAGAAGTCCACATCGTGAGGAATG
GAGGCACAAGCATGATGGTGGAGAACATGGCAGTCCGCCCAGCACCACACCCTGGCACCGTCATTTCCCA
CTCCGTGGCGATGCTGATCCTCATAGGCTCCCTGGAGCTCTGA

Translation (1040 aa):
MGTATRRKPHLLLVAAVALVSSSAWSSALGSQTTFGPVFEDQPLSVLFPEESTEEQVLLACRARASPPAT
YRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEER
DPVKAHEGWGVMLPCNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLAT
SHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSL
SPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAA
AGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQALAPDFR
LNPVRRLIPAARGGEILIPCQPRAAPKAVVLWSKGTEILVNSSRVTVTPDGTLIIRNISRSDEGKYTCFA
ENFMGKANSTGILSVRDATKITLAPSSADINLGDNLTLQCHASHDPTMDLTFTWTLDDFPIDFDKPGGHY
RRTNVKETIGDLTILNAQLRHGGKYTCMAQTVVDSASKEATVLVRGPPGPPGGVVVRDIGDTTIQLSWSR
GFDNHSPIAKYTLQARTPPAGKWKQVRTNPANIEGNAETAQVLGLTPWMDYEFRVIASNILGTGEPSGPS
SKIRTREAAPSVAPSGLSGGGGAPGELIVNWTPMSREYQNGDGFGYLLSFRRQGSTHWQTARVPGADAQY
FVYSNESVRPYTPFEVKIRSYNRRGDGPESLTALVYSAEEEPRVAPTKVWAKGVSSSEMNVTWEPVQQDM
NGILLGYEIRYWKAGDKEAAADRVRTAGLDTSARVSGLHPNTKYHVTVRAYNRAGTGPASPSANATTMKP
PPRRPPGNISWTFSSSSLSIKWDPVVPFRNESAVTGYKMLYQNDLHLTPTLHLTGKNWIEIPVPEDIGHA
LVQIRTTGPGGDGIPAEVHIVRNGGTSMMVENMAVRPAPHPGTVISHSVAMLILIGSLEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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