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Report for CCDS14552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14552.1 Public Homo sapiens X RTL9 24 110 108 CCDS HistoryNCBI Gene:57529Re-query CCDS DB by CCDS ID:14552.1Re-query CCDS DB by GeneID:57529See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14552.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000465301.2 ENSP00000419786.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000465301.2Link to Ensembl Protein Viewer:ENSP00000419786.2Re-query CCDS DB by Nucleotide ID:ENST00000465301Re-query CCDS DB by Protein ID:ENSP00000419786
Original member Current member EBI ENST00000520821.6 ENSP00000430395.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000520821.6Link to Ensembl Protein Viewer:ENSP00000430395.2Re-query CCDS DB by Nucleotide ID:ENST00000520821Re-query CCDS DB by Protein ID:ENSP00000430395
Original member Current member EBI ENST00000540313.1 ENSP00000441452.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540313.1Link to Ensembl Protein Viewer:ENSP00000441452.1Re-query CCDS DB by Nucleotide ID:ENST00000540313Re-query CCDS DB by Protein ID:ENSP00000441452
Original member Current member NCBI NM_001385449.1 NP_001372378.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001385449.1Link to Protein Sequence:NP_001372378.1Re-query CCDS DB by Nucleotide ID:NM_001385449Re-query CCDS DB by Protein ID:NP_001372378Link to BLAST:NP_001372378.1
Original member Current member NCBI NM_020769.2 NP_065820.1 Accepted alive Link to Nucleotide Sequence:NM_020769.2Link to Protein Sequence:NP_065820.1Re-query CCDS DB by Nucleotide ID:NM_020769Re-query CCDS DB by Protein ID:NP_065820Link to BLAST:NP_065820.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372378.1 1388 Q8NET4 1388 100% 0 0
NP_065820.1 1388 Q8NET4 1388 100% 0 0

Chromosomal Locations for CCDS 14552.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 110450618 110454664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 110455202 110455321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4167 nt):
ATGTCAATACCCTTACATTCACTGCGATTCAACAATACAATGAGGGAGGAAAATGTTGAGCCCCAAAACA
AGCAGATGGCCTTCTGTAGACCAATGACAGAGACCAGAGCAGACGTACAGATTCTGCATTCTCATGTACA
GTTGCCTATAGTCTCAACTTCAGCCTCAGACCCTGGAGGGACATCCACACAGTTGATGACATCTCCAGTC
TTTGACACCATGTCTGCACCTCTAATGGGAGTACCAAACTCTGGAGCATTGTCCCCACCCCTAATGCCAG
CCTCAGACTCTGGGGCACTTTCCCCATTGCTAATGCCAGCCTCAGACTCTGGGGCACTGTCCCCATTGCT
AATGCCAGCCTTAGATTCTGGAACATTGTCCCCATTGCTGTCCACTTCAGAGTATGGGGTAATGTCCCCA
GGGATGATGACAATTCCTGATTTTGGAACGATGTCCGCAACGCTAATGGTAGCACCAGATTCTGCAGAGA
TATCACCATTGGCAATGCCAGCTCCATCCTCTGGAGTGGTGTGTACACCTATAATGAGCACTTCATCCTC
TGAGGCAATGTCCACACCATTAATGCTAGCCCCAGATTCTGGAGAGTTATCCCCAATTCTAATGCAAGAT
ATGAATCCTGGAGTGATGTCTACACAGCCAGTGCCAGCTCCCAGCTCTGAGGCAATGTCCCCATTGCAAA
TTACAGATGAAGACACCGAAGCAATGTCCAAAGTGCTAATGACTGCTCTAGCCTCTGGAGAGATATCTTC
GCTGCTAATGTCAGGCACGGACTCTGAAGCAATATCCTCACTGATAATGTCAGCTGTAGCTTCTGGAGGT
ACATCACCCCAGCCAACAAGCACCCAAAACTCTGGGGGAATACCTACCCCGCTCATGTCAGATCTAGACT
CTGGAATAATGTCATCGCTTTTAATGTCATCTCCAGGCTCTGAAGTAATGTCCACACCGCTACTGTCAGT
CCCAGATGCTGGAGAAATGTCCACATTACCAAAGCCAGCTCCAGATGCTGAAGCAATGTCCCCAGCACTA
ATGACGGCCCTACCCTCTGGAGTGATGCCCACCCAAACGATGCCAGCCCCAGGCTCTGGGGCGATGTCCC
CATGGTCAACACAAAATGTAGACTCTGAAATGATGTCTAATCCGCCAGTGAGAGCAACAGCCTCTGGGGT
GATGTCTGCACCACCAGTAAGAGCTTTAGATTCTGGAGCAATGTCCACACCGCTAATGGGAGCCCCAGCC
TCTGGAAATATGTCTACATTGCAAAAGACAGTTCCAGCCTCTGGAGCCATGACCACCTCACTGATGACAG
TCCCAAGCTCTGGAGTGATGTCCACAGAGCAAATGTCAGCCACAGCCTCTAGAGTAATGTCCGCACAGTT
AACAATGGCCAAAACTTCTGGAGCAATGCCCACAGGCTCTATGAAAGCCGTGGCAAAACAATACAAGAGA
GCCACAGCCTCTGGAAAGATGTCCACGCCACTGAGGAGAGCTCCAACTTCTGGAGCAATGTCCACCCAAC
CAGTTACGGCAACAGCCTCTGAAACAATGTCCATGCCACAATTGACAGTCCCAGCCTCTGGATCAATGTC
CATGCTGCAAATGAGAGCCCCTGTCTCTGAAGCAATGTCCATGCCACAAATGAGAACCATGGCCTCAGGA
TTGACATCTGCAGCACAGATGAAAGCCATGACTTCTGGAGCAATGTCCACCCCACTAATGACAGCCCAAA
CCTCTGGATCAACATCCACGCTGTTAATGAGAGACACAGCCTCAGGAGTGATGTCCTGTCCACAAATGAG
ATCTCTGGCCTCTGGAGCATTGTCCAAGCCACTAATGACACCCAAAGCCTCAGGAACGATGTTCACGGAG
AAAATGACAACCACAGCTTCTGAAGCAATGCCCACACTGCTAATGAGAGACACAGTTTCTGGAGCTCTGT
CCATGCCGCAAATGACAGACACAGCCTCTGGAGGGTTGTCTGCATCGCTAATGAGAGACACAGCTTCTGG
AGCAATGTCCACATCACAAATGACAGCCACAGTCTCTGGAGGGATGTCCATGCCACTAATGAGAGCTCAA
GACCCAGGAGTAATGCCTGCCTCACTAATGAGAGCCAAAGTGTCTGGAAAGATGCTCAGTCAGCCAATGA
GCACCCAAGATCCTGGAGGGATGTCCATGTCGCCCATGAAGTCCATGACCGCTGGAGGGATGCAGATGAA
TTCCCCAACCTCTGATGTGATGTCCACACCAACAGTGAGAGCCTGGACCTCTGAAACAATGTCCACACCA
CTAATGAGAACCTCAGACCCTGGAGAGAGGCCCTCACTGCTCACAAGAGCTTCATCCTCTGGAGAGATGT
CCCTACCACTAATGAGAGCTCCAGCTTCTGGAGAGATAGCCACGCCTCTGAGATCCCCAGCTTATGGAGC
CATGTCTGCTCCACAAATGACAGCCACAGCCTCTGGAATGATGTCATCCATGCCACAAGTGAAGGCTCCC
ATCTCTGGAGCAATGTCCATGCCACTAACAAGATCCACAGCCTCTGGAGGGATGTCCATGCCACTGATGA
GAGCCCCAGACTCTAGAGTGACATCCACATCACAAATGATGCCCACAGCTTCTGGAGACATGTGCACACT
ACCAGTGCGAGCCCCAGCCTCTGGAGGGGTGTCCTCACCACTAGTAAGAGCTCCAGCCTCTGGAACTATG
TCCACACCACTAAGGAGACCCTCAGCCTGTGAGACTGTGTCCACAGAGTTAATGAGAGCTTCAGCCTCTG
GACATATGTCCACTGCACAAACAACAGCCATGGTCTCTGGAGGGATGTCCAAGCCATTAATGAGAGCCCC
GGCCTCTGGAACAATGCCCATGCCTTTAATGTCAGCCATGGCTTCTGGAGAGATGTCTATGCCGCTAATG
GAAACCATGGCCTCTGGAGCAACGTCCACATTGCAAACCAGTGTTGCGAACTCTAGATCTATGTCCTTGT
CACAAACAACATATACCGTGTCTGGAAGGATGGCCACAGCGCCAATTAGAGCCTCTGCTTCTGGAGCAAG
GTCCACATCATTTATGAGAGCCTCAGTTTCTGGATCGATGCCCATGCCACTACCAAGAGCCACAGCCTCT
GGATGTGGCATGGGTATGTCCATGCCACAAATGACAGCCACAGACTCTAGAGGGATGTCCACACCACTAA
TGAGGGCCTCAGGCCCTGGAACAATGTCCACACCACAGACAGCCTTTGGAGTGATGTCCACTCCGGAAAT
CAAAGCCACAGACTCTGGAGAGGCATCCACCTCTCACATTAACATCACAGCCTCTGGATCAAAGCCCACA
TCGCACATGACTGCCACAACTCCTGAAACTGCGAAACCACCACCAAAGGAAGTGCCATCCTTCGGAATGT
TGACCCCAGCACTCTGCTACCTCTTAGAAGAGCAGGAAGCAGCCCGGGGCTCATGCTCTGTGGAGGAAGA
GATGGAGATTGATGAGGAGAAGCAAATGAAGGGGTTTTTGGACGATTCAGAGAGAATGGCATTTCTGGTA
TCTCTTCATCTGGGAGCAGCAGAGAGGTGGTTCATCTTGCAAATGGAGGTAGGAGAACCTCTCTCACATG
AAAATAAATCTTTCCTGAGAAGATCCCAGGGCATATATGACTCCCTATCTGAGATAGACATCCTCAGTGC
TGTTCTTTGCCATCCCAAACAGGGCCAAAAGTCAGTCAGGCAGTATGCCACTGACTTCCTGCTGCTGGCC
CGACATTTGTCTTGGTCTGATGCCATTCTACGGACCAGGTTTCTGGAAGGACTCTCAGAAGCTGTTACCA
CCAAAATGGGTCGGATCTTCCTGAAGGTGGCTGGCAGCCTAAAGGAGCTGATAGACAGGTCTCTGTACAC
CGAGTGCCAGCTGGCTGAAGAGAAGGATTCCCCAGGCAACTCAAGCCAGGTTCTGCCAACAGCCTGTAAG
CGGAATAATGAGGAGGCCATGGGGAATGAACTGAGCTCTCAGCAGCAGACTGAGGAGCACCAGCATGTTT
CCAAACGCTGTTACTACCTGAAAGAGCATGGAGACCCCCAAGAAGGTCTTCATGATCACCTTGGACAGAG
CACAGGCCATCATCAGAAGGCCCATACCAACAAGTAA

Translation (1388 aa):
MSIPLHSLRFNNTMREENVEPQNKQMAFCRPMTETRADVQILHSHVQLPIVSTSASDPGGTSTQLMTSPV
FDTMSAPLMGVPNSGALSPPLMPASDSGALSPLLMPASDSGALSPLLMPALDSGTLSPLLSTSEYGVMSP
GMMTIPDFGTMSATLMVAPDSAEISPLAMPAPSSGVVCTPIMSTSSSEAMSTPLMLAPDSGELSPILMQD
MNPGVMSTQPVPAPSSEAMSPLQITDEDTEAMSKVLMTALASGEISSLLMSGTDSEAISSLIMSAVASGG
TSPQPTSTQNSGGIPTPLMSDLDSGIMSSLLMSSPGSEVMSTPLLSVPDAGEMSTLPKPAPDAEAMSPAL
MTALPSGVMPTQTMPAPGSGAMSPWSTQNVDSEMMSNPPVRATASGVMSAPPVRALDSGAMSTPLMGAPA
SGNMSTLQKTVPASGAMTTSLMTVPSSGVMSTEQMSATASRVMSAQLTMAKTSGAMPTGSMKAVAKQYKR
ATASGKMSTPLRRAPTSGAMSTQPVTATASETMSMPQLTVPASGSMSMLQMRAPVSEAMSMPQMRTMASG
LTSAAQMKAMTSGAMSTPLMTAQTSGSTSTLLMRDTASGVMSCPQMRSLASGALSKPLMTPKASGTMFTE
KMTTTASEAMPTLLMRDTVSGALSMPQMTDTASGGLSASLMRDTASGAMSTSQMTATVSGGMSMPLMRAQ
DPGVMPASLMRAKVSGKMLSQPMSTQDPGGMSMSPMKSMTAGGMQMNSPTSDVMSTPTVRAWTSETMSTP
LMRTSDPGERPSLLTRASSSGEMSLPLMRAPASGEIATPLRSPAYGAMSAPQMTATASGMMSSMPQVKAP
ISGAMSMPLTRSTASGGMSMPLMRAPDSRVTSTSQMMPTASGDMCTLPVRAPASGGVSSPLVRAPASGTM
STPLRRPSACETVSTELMRASASGHMSTAQTTAMVSGGMSKPLMRAPASGTMPMPLMSAMASGEMSMPLM
ETMASGATSTLQTSVANSRSMSLSQTTYTVSGRMATAPIRASASGARSTSFMRASVSGSMPMPLPRATAS
GCGMGMSMPQMTATDSRGMSTPLMRASGPGTMSTPQTAFGVMSTPEIKATDSGEASTSHINITASGSKPT
SHMTATTPETAKPPPKEVPSFGMLTPALCYLLEEQEAARGSCSVEEEMEIDEEKQMKGFLDDSERMAFLV
SLHLGAAERWFILQMEVGEPLSHENKSFLRRSQGIYDSLSEIDILSAVLCHPKQGQKSVRQYATDFLLLA
RHLSWSDAILRTRFLEGLSEAVTTKMGRIFLKVAGSLKELIDRSLYTECQLAEEKDSPGNSSQVLPTACK
RNNEEAMGNELSSQQQTEEHQHVSKRCYYLKEHGDPQEGLHDHLGQSTGHHQKAHTNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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