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Report for CCDS1465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1465.1 Public Homo sapiens 1 EIF2D 24 110 108 CCDS HistoryNCBI Gene:1939Re-query CCDS DB by CCDS ID:1465.1Re-query CCDS DB by GeneID:1939See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1465.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000271764.7 ENSP00000271764.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000271764.7Link to Ensembl Protein Viewer:ENSP00000271764.2Re-query CCDS DB by Nucleotide ID:ENST00000271764Re-query CCDS DB by Protein ID:ENSP00000271764
Original member Current member NCBI NM_006893.3 NP_008824.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006893.3Link to Protein Sequence:NP_008824.2Re-query CCDS DB by Nucleotide ID:NM_006893Re-query CCDS DB by Protein ID:NP_008824Link to BLAST:NP_008824.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008824.2 584 P41214-1 584 100% 0 0

Chromosomal Locations for CCDS 1465.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 206591775 206591845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206593619 206593793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206595718 206595838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206597100 206597195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206599003 206599092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206599463 206599612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206599733 206599836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206600263 206600308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206602336 206602453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206602951 206603204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206605400 206605507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206608236 206608326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206609376 206609459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206611184 206611374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 206612287 206612342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGTTTGCCAAGGCCTTTCGGGTCAAGTCCAACACGGCCATCAAGGGGTCGGACAGGAGAAAGCTTCGAG
CTGATGTGACAACTGCTTTCCCCACCCTTGGAACTGATCAAGTCTCTGAGTTAGTACCTGGAAAGGAGGA
GCTCAACATTGTGAAGTTGTATGCTCACAAAGGGGATGCAGTGACTGTGTACGTGAGTGGTGGTAACCCC
ATCCTCTTTGAACTGGAGAAAAATCTGTATCCAACAGTGTACACGCTGTGGTCCTATCCTGATCTTCTGC
CAACCTTTACAACATGGCCTCTGGTGCTCGAGAAACTGGTAGGGGGAGCAGATTTGATGCTGCCTGGACT
GGTGATGCCCCCTGCTGGTCTGCCTCAGGTACAGAAGGGCGACCTCTGTGCCATTTCTTTGGTGGGGAAC
AGAGCCCCTGTAGCCATTGGAGTTGCAGCCATGTCCACAGCTGAGATGCTCACGTCAGGCCTGAAGGGAA
GGGGCTTCTCTGTGCTCCACACTTACCAGGACCACTTGTGGCGGTCTGGAAACAAGTCCTCTCCACCTTC
CATTGCTCCACTGGCCCTGGATTCAGCAGATCTCAGTGAAGAGAAGGGGTCTGTCCAGATGGACTCCACC
CTGCAGGGAGACATGAGGCACATGACCCTGGAGGGGGAAGAGGAGAATGGGGAGGTTCACCAGGCACGTG
AAGACAAGTCTCTCTCAGAAGCCCCAGAAGACACCAGCACCAGGGGCCTGAACCAAGACTCCACAGATAG
CAAAACGCTTCAAGAACAAATGGATGAGCTGTTACAGCAATGCTTCTTACATGCCTTGAAGTGCCGAGTC
AAAAAGGCTGACCTCCCTTTACTCACCAGCACTTTCCTTGGCAGCCACATGTTCTCCTGCTGCCCCGAAG
GACGACAACTGGACATAAAGAAGTCAAGCTACAAAAAGCTCTCTAAGTTCCTGCAGCAAATGCAGCAGGA
GCAGATTATACAGGTGAAGGAGCTGAGCAAAGGGGTGGAGAGCATTGTGGCTGTGGACTGGAAACACCCG
AGGATTACATCTTTCGTCATACCCGAGCCCTCCCCGACCTCCCAGACTATCCAGGAGGGTAGCAGGGAAC
AGCCCTATCACCCTCCAGATATAAAACCCCTCTACTGTGTCCCAGCCAGCATGACCCTGCTCTTCCAGGA
GTCTGGCCACAAGAAGGGGAGCTTTCTGGAGGGCAGTGAGGTCCGAACGATCGTCATTAACTACGCCAAG
AAAAATGACCTGGTTGATGCAGACAACAAAAATCTTGTGAGATTGGATCCCATCCTATGTGACTGCATCT
TAGAGAAAAATGAACAGCATACAGTCATGAAGCTTCCATGGGACAGTCTTCTGACCAGGTGTTTGGAAAA
ATTACAGCCTGCCTATCAAGTGACCCTTCCCGGACAAGAGCCCATTGTGAAGAAAGGGAGAATCTGTCCA
ATTGACATCACCCTAGCACAAAGAGCGTCTAATAAAAAGGTGACCGTGGTCCGGAACTTGGAGGCCTATG
GTCTGGACCCATACTCAGTGGCTGCCATCCTTCAGCAGCGATGCCAGGCTAGCACCACCGTCAATCCTGC
CCCTGGGGCCAAGGACAGCCTTCAGGTGCAGATCCAGGGAAACCAGGTCCACCACCTCGGCTGGCTATTG
CTTGAAGAGTATCAGCTCCCTCGAAAACACATCCAAGGTCTAGAAAAGGCCCTCAAACCTGGCAAGAAGA
AGTGA

Translation (584 aa):
MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDAVTVYVSGGNP
ILFELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMPPAGLPQVQKGDLCAISLVGN
RAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPSIAPLALDSADLSEEKGSVQMDST
LQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQMDELLQQCFLHALKCRV
KKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKHP
RITSFVIPEPSPTSQTIQEGSREQPYHPPDIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAK
KNDLVDADNKNLVRLDPILCDCILEKNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICP
IDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLL
LEEYQLPRKHIQGLEKALKPGKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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