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Report for CCDS14652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14652.1 Public Homo sapiens X SAGE1 24 110 108 CCDS HistoryNCBI Gene:55511Re-query CCDS DB by CCDS ID:14652.1Re-query CCDS DB by GeneID:55511See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14652.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324447.7 ENSP00000323191.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000324447.7Link to Ensembl Protein Viewer:ENSP00000323191.3Re-query CCDS DB by Nucleotide ID:ENST00000324447Re-query CCDS DB by Protein ID:ENSP00000323191
Original member Current member EBI ENST00000370709.4 ENSP00000359743.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370709.4Link to Ensembl Protein Viewer:ENSP00000359743.3Re-query CCDS DB by Nucleotide ID:ENST00000370709Re-query CCDS DB by Protein ID:ENSP00000359743
Original member Current member NCBI NM_001381902.1 NP_001368831.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001381902.1Link to Protein Sequence:NP_001368831.1Re-query CCDS DB by Nucleotide ID:NM_001381902Re-query CCDS DB by Protein ID:NP_001368831Link to BLAST:NP_001368831.1
Original member Current member NCBI NM_018666.3 NP_061136.2 Accepted alive Link to Nucleotide Sequence:NM_018666.3Link to Protein Sequence:NP_061136.2Re-query CCDS DB by Nucleotide ID:NM_018666Re-query CCDS DB by Protein ID:NP_061136Link to BLAST:NP_061136.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001368831.1 904 Q9NXZ1 904 100% 0 0
NP_061136.2 904 Q9NXZ1 904 100% 0 0

Chromosomal Locations for CCDS 14652.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 135896243 135896329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135901559 135901691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135904477 135904569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135905252 135905392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135906024 135906164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135906411 135906551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135906926 135907066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135907313 135907453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135907701 135907841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135908089 135908229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135908477 135908617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135908864 135909004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135909639 135909779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135910030 135910170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135910415 135910555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135911192 135911332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135911579 135911953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135912321 135912414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135912798 135912897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2715 nt):
ATGCAGGCTTCTCCACTTCAAACGAGTCAACCAACTCCACCTGAAGAACTTCATGCTGCTGCCTATGTGT
TTACAAATGATGGGCAGCAAATGAGGAGTGATGAAGTAAATCTGGTTGCAACAGGGCATCAAAGCAAAAA
GAAACATTCCAGAAAATCCAAGAGACACTCTTCATCTAAGAGAAGGAAGAGTATGTCCTCGTGGTTAGAC
AAACAGGAAGATGCTGCAGTCACTCACAGCATTTGTGAAGAGAGGATAAATAACGGCCAACCAGTAGCTG
ATAATGTCTTGTCAACTGCTCCACCATGGCCTGATGCTACCATCGCTCACAATATCCGTGAAGAGAGGAT
GGAAAATGGCCAATCTCGAACTGACAAAGTCTTGTCAACTGCTCCACCACAGCTTGTTCATATGGCTGCA
GCTGGTATTCCATCCATGAGTACCAGGGATCTGCATTCTACCGTCACTCACAATATCCGTGAAGAGAGAA
TGGAAAATGGCCAACCCCAACCTGATAACGTCTTGTCAACTGGTCCCACAGGGCTTATTAATATGGCAGC
AACTCCTATTCCAGCCATGAGTGCCAGAGATCTCTATGCTACAGTCACTCACAATGTCTGTGAACAGAAG
ATGGAAAATGTCCAACCAGCACCTGATAACGTGTTGTTGACTCTTCGACCACGGCGTATTAATATGACAG
ACACTGGTATTTCACCCATGAGTACCAGGGATCCATATGCTACCATCACTTACAATGTCCCTGAGGAGAA
GATGGAAAAGGGCCAACCCCAACCTGATAACATCTTGTCAACTGCTTCAACAGGGCTTATTAATGTGGCA
GGAGCTGGTACTCCAGCCATCAGCACCAATGGCCTGTATTCCACCGTCCCTCACAATGTCTGTGAAGAGA
AGATGGAAAATGACCAACCGCAACCTAATAACGTATTGTCAACTGTTCAACCAGTGATTATTTATTTGAC
AGCAACTGGTATTCCGGGCATGAATACCAGGGATCAGTATGCTACCATCACTCACAATGTCTGTGAAGAG
AGAGTGGTAAATAACCAACCACTACCTAGTAACGCCTTGTCAACTGTTCTACCAGGGCTTGCTTATTTGG
CAACAGCTGATATGCCAGCCATGAGTACCAGGGATCAGCATGCTACCATCATTCACAATCTGCGTGAAGA
GAAGAAAGATAACAGCCAACCAACCCCTGATAACGTCTTGTCAGCTGTTACACCAGAGCTTATTAACTTG
GCAGGAGCTGGTATTCCACCCATGAGTACCAGGGATCAGTATGCTACCGTCAATCACCATGTCCATGAAG
CAAGGATGGAAAATGGCCAACGAAAACAGGATAACGTCTTGTCAAATGTTCTATCCGGGCTTATTAATAT
GGCAGGAGCTAGTATTCCAGCAATGAGTTCCAGGGATCTGTATGCTACCATTACTCACAGTGTTCGTGAA
GAGAAGATGGAAAGTGGCAAACCCCAAACTGATAAGGTCATATCAAATGATGCACCACAGCTTGGTCATA
TGGCTGCAGGTGGTATTCCATCCATGAGTACCAAGGATCTGTATGCTACCGTCACTCAAAATGTCCATGA
AGAGAGGATGGAAAATAACCAACCACAACCTAGTTATGACTTGTCAACTGTTCTACCAGGACTTACTTAT
TTGACAGTAGCTGGTATTCCGGCCATGAGTACCAGGGATCAGTATGCTACCGTCACTCACAATGTCCATG
AAGAGAAGATTAAAAATGGCCAAGCAGCATCCGATAATGTCTTCTCGACTGTTCCACCAGCATTTATTAA
TATGGCAGCAACTGGTGTTTCATCCATGAGTACCAGGGATCAGTATGCTGCAGTCACTCACAACATCCGT
GAAGAGAAGATAAATAACAGCCAACCAGCACCTGGTAACATCTTGTCAACTGCTCCTCCATGGCTTCGTC
ATATGGCAGCAGCTGGAATTTCATCCACGATTACCAGGGATCTGTATGTCACCGCCACTCACAGTGTCCA
TGAGGAGAAGATGACAAATGGCCAACAGGCACCTGATAACTCCTTGTCAACGGTTCCACCTGGTTGTATT
AATCTGTCAGGAGCTGGTATTTCATGCAGAAGTACCAGGGATCTGTATGCTACTGTCATTCACGATATCC
AGGAGGAGGAGATGGAAAATGATCAAACCCCTCCTGATGGCTTCCTGTCAAATTCTGATTCACCAGAGCT
GATAAATATGACAGGACATTGTATGCCACCCAATGCATTGGATTCTTTCTCTCACGACTTCACAAGTCTC
AGCAAAGATGAGCTGCTTTACAAACCTGATAGTAATGAATTTGCGGTAGGCACCAAAAACTACAGTGTCT
CTGCAGGTGACCCACCAGTTACAGTAATGTCTTTGGTGGAAACTGTGCCAAATACACCACAAATATCTCC
TGCCATGGCAAAGAAAATTAATGATGATATAAAATATCAATTAATGAAAGAAGTTCGAAGGTTTGGGCAA
AATTATGAAAGAATTTTCATTTTGCTTGAAGAGGTACAAGGATCTATGAAAGTCAAGAGACAATTTGTTG
AATTTACCATCAAGGAAGCAGCAAGGTTTAAAAAAGTTGTCTTAATTCAGCAACTCGAGAAGGCGCTTAA
AGAAATAGATTCCCACTGCCATCTCAGAAAAGTTAAGCACATGAGAAAAAGATAA

Translation (904 aa):
MQASPLQTSQPTPPEELHAAAYVFTNDGQQMRSDEVNLVATGHQSKKKHSRKSKRHSSSKRRKSMSSWLD
KQEDAAVTHSICEERINNGQPVADNVLSTAPPWPDATIAHNIREERMENGQSRTDKVLSTAPPQLVHMAA
AGIPSMSTRDLHSTVTHNIREERMENGQPQPDNVLSTGPTGLINMAATPIPAMSARDLYATVTHNVCEQK
MENVQPAPDNVLLTLRPRRINMTDTGISPMSTRDPYATITYNVPEEKMEKGQPQPDNILSTASTGLINVA
GAGTPAISTNGLYSTVPHNVCEEKMENDQPQPNNVLSTVQPVIIYLTATGIPGMNTRDQYATITHNVCEE
RVVNNQPLPSNALSTVLPGLAYLATADMPAMSTRDQHATIIHNLREEKKDNSQPTPDNVLSAVTPELINL
AGAGIPPMSTRDQYATVNHHVHEARMENGQRKQDNVLSNVLSGLINMAGASIPAMSSRDLYATITHSVRE
EKMESGKPQTDKVISNDAPQLGHMAAGGIPSMSTKDLYATVTQNVHEERMENNQPQPSYDLSTVLPGLTY
LTVAGIPAMSTRDQYATVTHNVHEEKIKNGQAASDNVFSTVPPAFINMAATGVSSMSTRDQYAAVTHNIR
EEKINNSQPAPGNILSTAPPWLRHMAAAGISSTITRDLYVTATHSVHEEKMTNGQQAPDNSLSTVPPGCI
NLSGAGISCRSTRDLYATVIHDIQEEEMENDQTPPDGFLSNSDSPELINMTGHCMPPNALDSFSHDFTSL
SKDELLYKPDSNEFAVGTKNYSVSAGDPPVTVMSLVETVPNTPQISPAMAKKINDDIKYQLMKEVRRFGQ
NYERIFILLEEVQGSMKVKRQFVEFTIKEAARFKKVVLIQQLEKALKEIDSHCHLRKVKHMRKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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