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Report for CCDS14817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14817.1 Public Mus musculus 1 Ppp1r42 23 108 98 CCDS HistoryNCBI Gene:69312Re-query CCDS DB by CCDS ID:14817.1Re-query CCDS DB by GeneID:69312See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14817.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027049.9 ENSMUSP00000027049.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027049.9Link to Ensembl Protein Viewer:ENSMUSP00000027049.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000027049Re-query CCDS DB by Protein ID:ENSMUSP00000027049
Original member Current member NCBI NM_145692.2 NP_663730.1 Accepted alive Link to Nucleotide Sequence:NM_145692.2Link to Protein Sequence:NP_663730.1Re-query CCDS DB by Nucleotide ID:NM_145692Re-query CCDS DB by Protein ID:NP_663730Link to BLAST:NP_663730.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663730.1 357 Q8R1Z4-1 357 100% 0 0

Chromosomal Locations for CCDS 14817.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 9968820 9968931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9976587 9976746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9978816 9978947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9985592 9985709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9995146 9995262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9999401 9999539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9999971 10000137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10003235 10003363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGTTCGACTGACGGTGGATTTAATTGCCAAAAACAGCAATCTTAAACCCAGAAAAGAAGAGACCCTTG
CACAATGCCTGAAGAAAATAACACACATAAATTTCTCAGACAGAAATATAGACTCGATTGATGACCTCTC
TCTTTGCAGAAACCTGAGTGTTTTATATTTATATGATAATCGCATTAGTCAAGTCACTAACCTGAATTAC
ACCACAAATCTGACCCACTTGTACCTACAGAACAATTGCATTTCCTGCATTGAAAACCTCAGTTCACTAA
AGAAATTGGAAAAACTGTATCTGGGAGGCAATTACATTGCGGTCATAGAAGGCTTGGAAGGATTAGAAGA
ACTAAGAGAGCTTCATGTTGAAAGTCAGAGGCTCCCTCTAGGCGAAAAGCTTCTGTTTGATCCAAGAACT
CTTCGTTCTCTAGCGAAATCCCTCTCTACTTTGAATATCAGCAACAATAACATTGATGACATAAAAGACT
TAGAGATCTTGGAGAATCTTAATCACCTGATTGCAGTTGACAACCAGCTGATGCACGTGAAGGACTTGGA
GCTTTTACTGAAAAAACTGATGAAGCTGTGGAAAATGGATCTAAATGGAAATCCTGTTTGTCTTAAACCA
AAATACAGGGACAAACTGATACTGACGTCCAAGTCACTGGAATTTCTTGATGGAAAAGAAATAAAAGATA
TGGAAAGACAATTCCTAATGAATTGGAAAGCATCCAAAGATGCCAAGAAAATCAGCAAGAAAAGGAGGAG
CAGAAGTGAGGATGCAAGCAACTCCTATATAAGTAACTTTGAAACAGTACATCACATAGTTCCTGTTTAT
TACCCACAGGTGGGTAAGCCAAAAGTAATCTTCTTCTCCGATGTACAGAGATATCTTGTACATGGAAATG
CATCTTCAAAATGTTCCCAAGAAGATAAAACTACAATTACTGAAGACATAGGGAATCTGTCCTTGAAGGA
ATCTGAAAGCTCGCTAACAAAAAACGATATCCATGAACCTCACCTTCTCCAAAATCCAAAAGTAAAGGAA
AATTTGTCTGAGAAAAAGGAGTAA

Translation (357 aa):
MVRLTVDLIAKNSNLKPRKEETLAQCLKKITHINFSDRNIDSIDDLSLCRNLSVLYLYDNRISQVTNLNY
TTNLTHLYLQNNCISCIENLSSLKKLEKLYLGGNYIAVIEGLEGLEELRELHVESQRLPLGEKLLFDPRT
LRSLAKSLSTLNISNNNIDDIKDLEILENLNHLIAVDNQLMHVKDLELLLKKLMKLWKMDLNGNPVCLKP
KYRDKLILTSKSLEFLDGKEIKDMERQFLMNWKASKDAKKISKKRRSRSEDASNSYISNFETVHHIVPVY
YPQVGKPKVIFFSDVQRYLVHGNASSKCSQEDKTTITEDIGNLSLKESESSLTKNDIHEPHLLQNPKVKE
NLSEKKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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