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Report for CCDS14827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14827.1 Public Mus musculus 1 Terf1 23 108 98 CCDS HistoryNCBI Gene:21749Re-query CCDS DB by CCDS ID:14827.1Re-query CCDS DB by GeneID:21749See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14827.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000188371.6 ENSMUSP00000140744.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188371.6Link to Ensembl Protein Viewer:ENSMUSP00000140744.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188371Re-query CCDS DB by Protein ID:ENSMUSP00000140744
Original member NCBI NM_009352.3 NP_033378.1 Updated not alive Link to Nucleotide Sequence:NM_009352.3Link to Protein Sequence:NP_033378.1Re-query CCDS DB by Nucleotide ID:NM_009352Re-query CCDS DB by Protein ID:NP_033378
Current member NCBI NM_009352.4 NP_033378.1 Accepted alive Link to Nucleotide Sequence:NM_009352.4Link to Protein Sequence:NP_033378.1Re-query CCDS DB by Nucleotide ID:NM_009352Re-query CCDS DB by Protein ID:NP_033378Link to BLAST:NP_033378.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033378.1 421 P70371 421 100% 0 0

Chromosomal Locations for CCDS 14827.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 15805678 15805957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15807641 15807736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15813041 15813162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15815886 15815972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15818934 15819083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15819651 15819763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15831507 15831566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15833401 15833489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15838182 15838288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15842921 15843082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGCGGAGACGGTCTCCTCAGCGGCCCGGGACGCGCCGAGCCGTGAGGGCTGGACAGATTCGGATTCTC
CAGAGCAGGAGGAGGTGGGAGACGACGCGGAGCTGCTCCAGTGCCAGCTTCAGCTGGGGACCCCGAGAGA
GATGGAGAACGCGGAGCTTGTGGCTGAGGTGGAGGCCGTGGCTGCGGGCTGGATGCTCGACTTCCTCTGC
CTGTCTCTGTGCCGAGCCTTCCGTGACGGCCGCTCCGAGGACTTTCGTCGTACTCGTGACAGCGCCGAGG
CTATTATTCATGGACTACACAGACTTACAGCTTACCAATTGAAAACTGTGTATATATGTCAGTTTTTGAC
AAGAGTTGCATCTGGAAAGGCCCTTGATGCACAGTTTGAAGTTGATGAGCGTATTACACCCTTGGAATCA
GCCCTGATGATTTGGAACTCAATTGAAAAGGAACATGACAAACTGCATGACGAAATAAAGAATTTAATTA
AAATTCAGGCTGTAGCTGTTTGTATGGAAATTGGCAGCTTTAAGGAAGCAGAAGAAGTATTTGAAAGAAT
ATTTGGTGATCCAGAATTTTACACGCCTTTAGAAAGGAAGTTACTTAAGATAATCTCTCAGAAGGATGTG
TTCCACTCCCTTTTCCAACACTTCAGCTATAGCTGCATGATGGAGAAAATTCAGAGTTATGTGGGTGATG
TGTTAAGTGAAAAATCATCAACTTTTCTAATGAAGGCAGCAACAAAAGTAGTGGAAAATGAGAAAGCGAG
GACACAAGCGTCTAAGGATAGGCCAGATGCCACCAACACTGGAATGGACACTGAAGTTGGTTTGAATAAA
GAGAAAAGTGTTAATGGCCAGCAGTCTACAGAAACTGAACCCTTAGTGGATACAGTATCCTCAATAAGGT
CTCACAAGAACGCCTTATCGCAGTTAAAACACAGACGTGCTCCATCAGATTTCAGTAGGAACGAAGCAAG
AACAGGAACTCTTCAGTGTGAAACAACGATGGAAAGGAACCGAAGAACCAGTGGAAGGAATAGATTGTGT
GTCTCAGAGAATCAGCCAGACACTGATGACAAAAGTGGACGCAGGAAAAGACAGACATGGCTTTGGGAAG
AAGACAGAATTTTGAAGTGTGGTGTAAAGAAATATGGAGAGGGAAATTGGGCTAAAATACTATCCCATTA
TAAGTTCAACAACCGAACAAGTGTCATGTTAAAAGATAGATGGAGAACAATGAAGAGACTGAAACTGATT
AGCTGA

Translation (421 aa):
MAETVSSAARDAPSREGWTDSDSPEQEEVGDDAELLQCQLQLGTPREMENAELVAEVEAVAAGWMLDFLC
LSLCRAFRDGRSEDFRRTRDSAEAIIHGLHRLTAYQLKTVYICQFLTRVASGKALDAQFEVDERITPLES
ALMIWNSIEKEHDKLHDEIKNLIKIQAVAVCMEIGSFKEAEEVFERIFGDPEFYTPLERKLLKIISQKDV
FHSLFQHFSYSCMMEKIQSYVGDVLSEKSSTFLMKAATKVVENEKARTQASKDRPDATNTGMDTEVGLNK
EKSVNGQQSTETEPLVDTVSSIRSHKNALSQLKHRRAPSDFSRNEARTGTLQCETTMERNRRTSGRNRLC
VSENQPDTDDKSGRRKRQTWLWEEDRILKCGVKKYGEGNWAKILSHYKFNNRTSVMLKDRWRTMKRLKLI
S


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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