NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS14844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14844.1 Public Mus musculus 1 Paqr8 23 108 98 CCDS HistoryNCBI Gene:74229Re-query CCDS DB by CCDS ID:14844.1Re-query CCDS DB by GeneID:74229See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14844.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068880.13 ENSMUSP00000069127.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068880.13Link to Ensembl Protein Viewer:ENSMUSP00000069127.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068880Re-query CCDS DB by Protein ID:ENSMUSP00000069127
Original member Current member EBI ENSMUST00000167119.7 ENSMUSP00000128781.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167119.7Link to Ensembl Protein Viewer:ENSMUSP00000128781.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167119Re-query CCDS DB by Protein ID:ENSMUSP00000128781
Original member Current member EBI ENSMUST00000187651.1 ENSMUSP00000140913.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187651.1Link to Ensembl Protein Viewer:ENSMUSP00000140913.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187651Re-query CCDS DB by Protein ID:ENSMUSP00000140913
Original member Current member EBI ENSMUST00000189400.6 ENSMUSP00000141054.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189400.6Link to Ensembl Protein Viewer:ENSMUSP00000141054.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189400Re-query CCDS DB by Protein ID:ENSMUSP00000141054
Original member NCBI NM_001355122.1 NP_001342051.1 Updated not alive Link to Nucleotide Sequence:NM_001355122.1Link to Protein Sequence:NP_001342051.1Re-query CCDS DB by Nucleotide ID:NM_001355122Re-query CCDS DB by Protein ID:NP_001342051
Current member NCBI NM_001355122.2 NP_001342051.1 Accepted alive Link to Nucleotide Sequence:NM_001355122.2Link to Protein Sequence:NP_001342051.1Re-query CCDS DB by Nucleotide ID:NM_001355122Re-query CCDS DB by Protein ID:NP_001342051Link to BLAST:NP_001342051.1
Original member NCBI NM_028829.4 NP_083105.3 Updated not alive Link to Nucleotide Sequence:NM_028829.4Link to Protein Sequence:NP_083105.3Re-query CCDS DB by Nucleotide ID:NM_028829Re-query CCDS DB by Protein ID:NP_083105
Current member NCBI NM_028829.5 NP_083105.3 Accepted alive Link to Nucleotide Sequence:NM_028829.5Link to Protein Sequence:NP_083105.3Re-query CCDS DB by Nucleotide ID:NM_028829Re-query CCDS DB by Protein ID:NP_083105Link to BLAST:NP_083105.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342051.1 354 Q80ZE5 354 100% 0 0
NP_083105.3 354 Q80ZE5 354 100% 0 0

Chromosomal Locations for CCDS 14844.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 20934624 20935688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGACGACTGCCATCCTAGAGCGCCTGAGCACCCTGTCAATGAGTGGGCAGCAGCTGCGCCGTCTGCCCA
AGATTCTGGAAGAAGGACTTCCCAAGATGCCATGCACCGTCCCAGAAACCGACGTGCCCCAGCTCTTTAG
GGAGCCGTACATCCACGCGGGCTACCGCCCCACGGGGCACGAGTGGCGTTACTACTTCTTCAGCCTCTTT
CAGAAGCACAACGAGGTGGTCAACGTCTGGACCCACTTGCTGGCTGCTCTAGCGGTCCTTTTGCGATTCT
GGGCCTTTGTGGAGGCAGGGGCATTGCAGTGGGCCTCTCCCCACACCCTCCCCCTGCTCCTCTTTATCTT
GTCGTCCATCACTTACCTCACCTGCAGCCTCTTGGCCCACCTGCTCCAGTCCAAATCAGAGCTGTCCCAC
TACACGTTCTACTTTGTGGACTACGTCGGGGTCAGCGTCTACCAGTATGGCAGCGCCCTGGCTCACTTCT
TCTATAGCTCCGACCAGGCCTGGTATGAGCTGTTTTGGATTTTCTTCCTGCCGGCGGCTGCTTTCTGTGG
CTGGCTCTCCTGCGCTGGCTGTTGTTATGCCAAGTATCGCTACCGACGGCCTTATCCAGTTATGAGGAAG
ATCTGTCAAGTAGTACCAGCAGGGCTGGCCTTCGTCCTAGACATCAGCCCGGTGGCACACCGCGTGGCTC
TCTGCCACCTGGCCGGTTGCCAGGAGCAGGCGGCCTGGTACCACACCCTTCAGATCCTCTTCTTCCTCGT
CAGCGCATACTTCTTCTCGTGCCCTGTCCCCGAGAAGTACTTCCCCGGTTCCTGTGACATTGTGGGCCAC
GGACATCAAATCTTCCACGCCTTCCTGTCCGTCTGCACGCTCTCCCAGCTGGAGGCCATTCTTCTGGACT
ACCAGGGACGCCATGAGATCTTCCTCCAGCGCCACGGTCCCCTGTCTGTGTACAGCGCCTGTCTCTCCTT
TTTCGTTTTAGCTGCCTGCAGTGCGGCCACCGCCACCCTCCTGAGGCACAAGGTCAAGGACAGACTGATT
AAGAAAGATTCCTGA

Translation (354 aa):
MTTAILERLSTLSMSGQQLRRLPKILEEGLPKMPCTVPETDVPQLFREPYIHAGYRPTGHEWRYYFFSLF
QKHNEVVNVWTHLLAALAVLLRFWAFVEAGALQWASPHTLPLLLFILSSITYLTCSLLAHLLQSKSELSH
YTFYFVDYVGVSVYQYGSALAHFFYSSDQAWYELFWIFFLPAAAFCGWLSCAGCCYAKYRYRRPYPVMRK
ICQVVPAGLAFVLDISPVAHRVALCHLAGCQEQAAWYHTLQILFFLVSAYFFSCPVPEKYFPGSCDIVGH
GHQIFHAFLSVCTLSQLEAILLDYQGRHEIFLQRHGPLSVYSACLSFFVLAACSAATATLLRHKVKDRLI
KKDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH