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Report for CCDS14925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14925.1 Public Mus musculus 1 Ecrg4 23 108 98 CCDS HistoryNCBI Gene:78896Re-query CCDS DB by CCDS ID:14925.1Re-query CCDS DB by GeneID:78896See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 14925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027217.8 ENSMUSP00000027217.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027217.8Link to Ensembl Protein Viewer:ENSMUSP00000027217.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027217Re-query CCDS DB by Protein ID:ENSMUSP00000027217
Original member Current member NCBI NM_024283.3 NP_077245.2 Accepted alive Link to Nucleotide Sequence:NM_024283.3Link to Protein Sequence:NP_077245.2Re-query CCDS DB by Nucleotide ID:NM_024283Re-query CCDS DB by Protein ID:NP_077245Link to BLAST:NP_077245.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077245.2 148 Q99LS0 148 100% 0 0

Chromosomal Locations for CCDS 14925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 43730885 43730963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43737200 43737247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43738560 43738717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43742245 43742406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGAGCACCTCGTCTGCGCGGCCTGCAGTCCTGGCCCTTGCCGGGCTGGCTCTGCTCCTTCTGCTGTGCC
TGGGTCCAGATGGCATAAGTGGAAACAAACTCAAGAAGATGCTCCAGAAACGAGAAGGACCTGTCCCGTC
AAAGACTAATGTAGCTGTAGCCGAGAACACAGCAAAGGAATTCCTAGGTGGCCTGAAGCGTGCCAAACGA
CAGCTGTGGGACCGTACGCGGCCTGAGGTACAGCAGTGGTACCAGCAGTTCCTCTACATGGGCTTTGATG
AGGCTAAATTTGAAGATGATGTCAACTATTGGCTAAACAGAAATCGAAACGGCCATGACTACTATGGTGA
CTACTACCAGCGTCATTATGATGAAGATGCGGCCATTGGTCCCCACAGCCGGGAAAGCTTCAGGCATGGA
GCCAGTGTCAACTATAATGACTATTAA

Translation (148 aa):
MSTSSARPAVLALAGLALLLLLCLGPDGISGNKLKKMLQKREGPVPSKTNVAVAENTAKEFLGGLKRAKR
QLWDRTRPEVQQWYQQFLYMGFDEAKFEDDVNYWLNRNRNGHDYYGDYYQRHYDEDAAIGPHSRESFRHG
ASVNYNDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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