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Report for CCDS15035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15035.1 Public Mus musculus 1 Ankar 23 108 98 CCDS HistoryNCBI Gene:319695Re-query CCDS DB by CCDS ID:15035.1Re-query CCDS DB by GeneID:319695See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15035.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053499.5 ENSMUSP00000054056.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053499.5Link to Ensembl Protein Viewer:ENSMUSP00000054056.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053499Re-query CCDS DB by Protein ID:ENSMUSP00000054056
Original member NCBI NM_176980.4 NP_795954.2 Updated not alive Link to Nucleotide Sequence:NM_176980.4Link to Protein Sequence:NP_795954.2Re-query CCDS DB by Nucleotide ID:NM_176980Re-query CCDS DB by Protein ID:NP_795954
Current member NCBI NM_176980.5 NP_795954.2 Accepted alive Link to Nucleotide Sequence:NM_176980.5Link to Protein Sequence:NP_795954.2Re-query CCDS DB by Nucleotide ID:NM_176980Re-query CCDS DB by Protein ID:NP_795954Link to BLAST:NP_795954.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795954.2 1465 A2RT91 1465 100% 0 0

Chromosomal Locations for CCDS 15035.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 72643007 72643311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72644924 72644970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72646994 72647190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72650122 72650231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72650932 72651049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72651696 72651854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72652339 72652461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72656107 72656213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72658411 72658572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72658650 72658803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72658978 72659219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72665088 72665256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72666345 72666586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72670092 72670196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72673971 72674179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72675669 72675870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72679509 72679547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72679981 72680200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72681810 72681990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72687725 72687828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72688550 72688713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72689946 72690383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72698421 72699021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4398 nt):
ATGTCAAGAATAGTTAAAAAAGGAATAGTTAAAATTGATCAAGAACAAGATGAAGAAACCTTCCGGGAAA
ATTTAGCAGTACAAAGAAATGCCTCTGCTTTTTTTGAAAAATACGATAGAACTGAAGTGCAAGAATTATT
AACAACAACACTGGTCAGCTGGCTGGCTGCCAAGGATGATGCTCGTTCTCAGCTAGAAACCCCGTGTGGA
CTCATGAGTCAAATGAATAATGCAGGCTTCTCCACTGCCATCCTACTGACTCCTGTAGACCCTACTGCCC
TCTTAGACTACAGGGAAGTCCATCAGATCTTAAGGGAGTTGGCCATTGGAATTTATTGCTTAAATCAAAT
TCCTTCAATCAGTTTAGAAGCTAATTTTGATCAGAGTAGTTCTTGTCAATTACCTCCTGCTTATTATGAT
ACCAGGGTTGGACAAATTTTGATCCAGATTGACTACATGCTAAAAGCACTGTGGCATGGAATATACATGC
CCAAAGAGAAACGAGCCAGATTCTCTGAATTGTGGCGCACAATCATGGACATTGATCTAGACGGGAAGCC
TCAAACAACCAAAAATGTATTTTCTGAGTTTAGTTCGGCAGGTTTGGTTGATATTACAAATGATCCAGAC
TTTAATGGGATCTATGATGAAGACATGAATGAAGATCCAACGTATGAGCCCAATAGCCCTGAAGAAAAGG
CTGTGTTTATGAAATATGCTGAGAGTATAATGATGAAGCTGACATTCAGCACCGTCCAAATTCAACAGCA
CGAAAACATCTTTATATTTGAGACAGCCTATTGGCTTTCCAATGCTATAAAGTACAACCAGGATTATCTA
GACATTTGTACTTACCAGAGACTACAAAAAAGACTGTATCTTCAAAAAAAAGTTATTCAAAAACACTTTG
AGAAAAAAAAAGAAATCAGAAGAGGGATGGGCTATCTGAAGTTAATATGTTTTCTGATTCCATTTTTACT
CAGTTTAAAAAGGAAGATGAAAGTTCCATATCTAAATAGTCTACTTCCACCTTTTTCAGATGATAAGGTC
AAGACAGAGAGAGAACTGCCTCCATTTATTTATGGACGAGATTTTAAATGCCAGAATTTTGATTACAAAC
AGCATCAGTACTTCCACGTTCACGGAGGAATTGAATTTGACATTAGCACACATCCGGTTGAGAGTGCCCT
GGATGAGTTTAAGAAAAATGTAGAAAAAATATGGGAGTGTGCTTCCAGTGCCTCTGCAGAAGATGCGGGA
TACAAAGAAGTTTACCCAATACCAGTCATGGAGTTGAACGGAAAGAGCTACTATGTGATCCATTTTGAGC
TTGAAATTTTCTACCAGCAACTCTATAAGACTCAATGGTGGGTAGCCATAAATGAAACTGTGAATAATCT
GAAAGTGAAAAGGCTTCCACTGACTGAAGATCAACTACATGAGCAATTTAAAAAAAAATTTGGTTTAAAA
AAAGCTATGAAATGCAAGAGTATCCCATTTGGTGTGAAGTCTGCTGTTGAAAGAGGCTTGTCTGCTGTTT
TCTACACATTTAGCCGTAAAACCTCAAGCTCCACTATCAATGTCTCCGATGAAGCCGGCTATGCCATTTT
CCACCATGCTGCCCTGCACAACCGGGTCTCTGTCATATGTCAGCTGTGGAGCGCCAACTTCAACGTCAAC
CAGAGACGCTTCATCATGTTCAGCCAAGCAGACTCATCCAAAGTGGATATGAAAAAAGAAAGAAATGGTC
CAACACCTCTACATCTGGCTGCACAAGCTTGTTCACTGGAAGCAACCATCTGTCTACTTTGTTTCAAAGC
TGATTACACTCTAACTGAGAAGAGGGGCTGGATGCCAATCCACTTTGCTGCCTTCTATGATAACATCTGC
ATCCTCATTGCACTCTGTAGGAAGGATCCTAGTTTGCTAGAGGCCGAGGCAACAGCAGAGAATCAGTGCA
CTCCGCTGTTGCTGGCTGCCACTTCGGGAGCCCTAGACACTATTCAGTACCTGTTTTCTCTTGGTGCGAA
CTGGAGAAAAACAGACACAAAGGGAAACAACATTATCCACCTGTCGGTGCTGGCTTTTCACACAGAGGTG
CTCAAGTACATAATAGAGCTGAATATCCCTGAGCTTCCAGTTTGGGAAACTCTGGTGGAAATGTTGCAGT
GTGAAAGCTCCAAACGAAGAATGATGGCTGTCATGTCTTTAGAAGTAATTTGCTTAGCAAATGATCGATA
CTGGCAATGCATTTTGGATGCAGGCACTATTCCTGCCTTAGTCAATCTATTAAAAAGTCCCCAAATAAAA
CTGCAGTATAAAACCGTTGGGTTGCTGAGTAATATCTCAACTCATGTAAGTATAGTGCATGCTATAGTGG
AGGCAGGAGGCATTCCTGCTGTGATCAACCTGCTGACTTCAGATGAGCCTGAACTCCATTCTCGCTGTGC
TATTATTCTGTATGATGTTGCTAAGTGTGAAAACAAGGATGTTATTGCCAAATATAGTGGAATTCCAGCT
CTGATAAATCTCTTAAGCCTTAACAAAGAAAGTGTGCTAGTGAACGTAATGAACTGTATCCGGGTGTTAT
GTATGGGAAATGAAAGCAACCAACAATCAATGAAAGACAATAATGGCATCCAGTATCTCATCCAGTTTCT
GAGTTCTGATTCTGATGTGCTGAAGGCACTGTCCTCAGCTACAATTGCTGAGGTTGCCCGCGACAATAAG
GAAGTGCAGGATGCTATCGCAAAGGAAGGGGCCATCCCTCCCCTGGTAACTCTTTTTAAAGGGAAGCAGC
TCAGTGTCCAAGTAAAAGGTGCAATGGCTGTGGAATCACTGGCAAACTGCAACCCTTTAATCCAGAAGGA
ATTTCTGGAAAGAGAATTAACTAAGGACCTCCTAAAACTTCTACAGGCCTTTCAAATAGATGTTAAGGAG
CAGGGAGCCATAGCACTTTGGGCCTTGGCAGGACAAACATTGAAACAACAAAAGTATATGGCAGAGCAGA
TTGGATACAACCTCATAATAAGCATGCTCCTGTCACCATCAGCTAAGATGCAGTATGTAGGAGGTGAAGC
AGTCATAGCTCTGAGTAAGGACAGTCGGATGCATCAGAATCAGATATGTGAAGGCAAGGGCATTGCACCA
CTGGTTCGCCTGCTGAGGATTAATAAGATACCAGAAGGCACACTTCTGAGCGTCATCAGAGCAGTGGGGT
CCATTTGTATTGGTGTGGCCCACACGAGCAATCCCATGAGTCAACAATTTGTTGTAGAGGAAAATGCTCT
TCCAGTGCTTATTCAGCTACTAAGAAATCATCCTTCAATTAATATTAGGGTTGAGGTGGCATTTTCATTG
GCATGCATCGTCCTAGGGAATAATTCGCTAAAAAAGGAATTACAAAATGATGAAGGATTTGAATATTCTG
ATGTCCTTTATCTTCTTCACTCAAAAGATAAGGAAGTCTGCCTGAAAGCAGGTTATGCACTAACCCTTTT
TGCCTTCAACGATCGCTTTCAACAGCACTTGATATTGGAAACTGGATTGATAACTGTATCTATTTTTGAG
CCATTTCTTCAATCTAGCGTTGAAACAGAGAGGGCAATGGCAGCATTTCAGATCATCATATTAGCTAAAG
CCATTATTGATGTGGAACATGTTACTTTGTATGGAAGAGGGATTCAGATCTTAGCTGACAGTCTGAATTC
AGTCCATGCTCCTACTATTGCCTTGACAGGTAATATAATAGCCAGCCTGGCTCACTCGAGAGCTGGGATT
CCAGAGGCTTTTGTCTCACTGGGAACAGTCCAGCGGCTCTGCTACCACCTGTATGCAAGAAGCGAAGAGG
TTCGCACAGCATGTTCCTGTGCCCTTGGCTACCTCACTTACAATGCACATGCTTTCCGACTTCTGTTAAC
TGAGTGTAGGAATAAGCCGAACCAATTCCTGCGCATCACAAATAACATCAGTAAAGATGCAAAGATCAAT
CCTGCATTCCTAAAGGAGTTTCAACTGCAGCAAAGGATGGGACTTCCATCCTTAAGCCTGGAGAGGAATG
GAGGACCACCTGTAATTCCTGTCTTTAAAAAAGGGAAAGAGCACCGACAGAAAACAAGACCTAAAATCCA
ACCAAGAGATTCCCTGACTTTATTACCTCCAGTGACTAACGTCAAGGAGCTCTTCAGAACAACACACAAG
GCCAATATTTCCCACAACACTTTTTCATTTCCATCTGGAGTTTCATCAGATATCATAAATGTATCAAGAC
CAAGAATAGCATTTTTGAACAAACTTGGGAAAGATGAACAGAAAGCCAACCCAGACCCTCCAGCATTTTT
GAACAAACTTGGGAAAGATGAACAGAACGCCAACCCAGACCCTGCAGAAAGCCAATAA

Translation (1465 aa):
MSRIVKKGIVKIDQEQDEETFRENLAVQRNASAFFEKYDRTEVQELLTTTLVSWLAAKDDARSQLETPCG
LMSQMNNAGFSTAILLTPVDPTALLDYREVHQILRELAIGIYCLNQIPSISLEANFDQSSSCQLPPAYYD
TRVGQILIQIDYMLKALWHGIYMPKEKRARFSELWRTIMDIDLDGKPQTTKNVFSEFSSAGLVDITNDPD
FNGIYDEDMNEDPTYEPNSPEEKAVFMKYAESIMMKLTFSTVQIQQHENIFIFETAYWLSNAIKYNQDYL
DICTYQRLQKRLYLQKKVIQKHFEKKKEIRRGMGYLKLICFLIPFLLSLKRKMKVPYLNSLLPPFSDDKV
KTERELPPFIYGRDFKCQNFDYKQHQYFHVHGGIEFDISTHPVESALDEFKKNVEKIWECASSASAEDAG
YKEVYPIPVMELNGKSYYVIHFELEIFYQQLYKTQWWVAINETVNNLKVKRLPLTEDQLHEQFKKKFGLK
KAMKCKSIPFGVKSAVERGLSAVFYTFSRKTSSSTINVSDEAGYAIFHHAALHNRVSVICQLWSANFNVN
QRRFIMFSQADSSKVDMKKERNGPTPLHLAAQACSLEATICLLCFKADYTLTEKRGWMPIHFAAFYDNIC
ILIALCRKDPSLLEAEATAENQCTPLLLAATSGALDTIQYLFSLGANWRKTDTKGNNIIHLSVLAFHTEV
LKYIIELNIPELPVWETLVEMLQCESSKRRMMAVMSLEVICLANDRYWQCILDAGTIPALVNLLKSPQIK
LQYKTVGLLSNISTHVSIVHAIVEAGGIPAVINLLTSDEPELHSRCAIILYDVAKCENKDVIAKYSGIPA
LINLLSLNKESVLVNVMNCIRVLCMGNESNQQSMKDNNGIQYLIQFLSSDSDVLKALSSATIAEVARDNK
EVQDAIAKEGAIPPLVTLFKGKQLSVQVKGAMAVESLANCNPLIQKEFLERELTKDLLKLLQAFQIDVKE
QGAIALWALAGQTLKQQKYMAEQIGYNLIISMLLSPSAKMQYVGGEAVIALSKDSRMHQNQICEGKGIAP
LVRLLRINKIPEGTLLSVIRAVGSICIGVAHTSNPMSQQFVVEENALPVLIQLLRNHPSINIRVEVAFSL
ACIVLGNNSLKKELQNDEGFEYSDVLYLLHSKDKEVCLKAGYALTLFAFNDRFQQHLILETGLITVSIFE
PFLQSSVETERAMAAFQIIILAKAIIDVEHVTLYGRGIQILADSLNSVHAPTIALTGNIIASLAHSRAGI
PEAFVSLGTVQRLCYHLYARSEEVRTACSCALGYLTYNAHAFRLLLTECRNKPNQFLRITNNISKDAKIN
PAFLKEFQLQQRMGLPSLSLERNGGPPVIPVFKKGKEHRQKTRPKIQPRDSLTLLPPVTNVKELFRTTHK
ANISHNTFSFPSGVSSDIINVSRPRIAFLNKLGKDEQKANPDPPAFLNKLGKDEQNANPDPAESQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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