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Report for CCDS15039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15039.1 Public Mus musculus 1 Rufy4 23 108 98 CCDS HistoryNCBI Gene:435626Re-query CCDS DB by CCDS ID:15039.1Re-query CCDS DB by GeneID:435626See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15039.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080167.10 ENSMUSP00000079062.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080167.10Link to Ensembl Protein Viewer:ENSMUSP00000079062.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000080167Re-query CCDS DB by Protein ID:ENSMUSP00000079062
Original member NCBI NM_001034060.3 NP_001029232.2 Updated not alive Link to Nucleotide Sequence:NM_001034060.3Link to Protein Sequence:NP_001029232.2Re-query CCDS DB by Nucleotide ID:NM_001034060Re-query CCDS DB by Protein ID:NP_001029232
Current member NCBI NM_001034060.4 NP_001029232.2 Accepted alive Link to Nucleotide Sequence:NM_001034060.4Link to Protein Sequence:NP_001029232.2Re-query CCDS DB by Nucleotide ID:NM_001034060Re-query CCDS DB by Protein ID:NP_001029232Link to BLAST:NP_001029232.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001029232.2 479 Q3TYX8-2 479 100% 0 0

Chromosomal Locations for CCDS 15039.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74129047 74129073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74129339 74129445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74129698 74129841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74131178 74131247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74132720 74133346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74134104 74134207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74140919 74141065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74146654 74146764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74147644 74147746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGAGCTTCATATGCTCACAGGACAAGCTGAAGACCTCACTAGGAAAAGGTCGTGCCTTTATCCGACTCT
GCCTTGCCCGAGGCCAGCTGGCTGAGTCGATGCAGCTGTGCCTCCTGAACCCACAACTCACCAGGGAATG
GTATGGCCCTCGGAGCCCTCTGTTGTGCGCTGAGCTCCAGGAAGACATCTTGGACTCTCTCTATGCCCTC
AATGGAGTTGCCTTCAACTTGGACCTGCAGCGGCCAGACCTGGATGAAGCCTGGCCCATGTTCTCAGAGT
CCCGCTGTTCCAGTCCCAGCCGGACCGGGAAAAGAAGACCCGGGAAACCCAAAGGTTTTCCAGAGGAGGT
GAGATGCTCCAGGGGAGAGCAGCTGCAGGAACCAGACACTGGAGGAACCAGCTGTCTGCAGGATGCAACC
AGAGAAGACCGCACACCTGACCTCTGTAAACCCTTGCAGCCAAGCCATCTTCCCACCTTTCTGGAAGAGA
AGAGGGAGGATTCCAGAAGCCTCAGTTGTCCCCAGAGCACTTGGGAAACAGAAAGGGAAGGATTTCAGCT
AGACCAGAAGGATGGAGGCCCAAAGCCCAGGAAATTCCTGGAAAACTCAACAGCCAGCATCCAGCAACAG
AGGAGCAGGGCTAAGGATGTTAAAATGCAGCTGACAGGAAGGAAAGTTGAAGGAAAAGGAAGTCTGTCGG
GGACAGAAGATCAGAGAACAACAGAAGGGATCCAGAAAAGGGCAGCAGATTGGGACCTTGGCCAGGGGCT
GATGGCCCCCGGTCTTCAGGGAAGAGAAGATGCAGAGTTAGGATACAGGTGTGAGTGGAATCAGCCTGAT
GTTCTCAGGCAATCCTGGGTCCTGGGAACAAAGAAAAGTTCTCCCACAGAGAAGCCACAAGAGTGGACAG
GAGTGACCAGTGGAACCATGCAGGAGGATGGGTCAGAAGTGCCCTTGCAGCAGGAGGTGATCAAGGACCC
TGGGTATGGGCTCCAGCTGGCAAAGGAACAGGCCCAGTGCCAGGAGCAGCTGCGGGCACAGGAAGCAGAA
CTTCAGGCGCTCCAGGAGCAGCTCAGCAGGTGTCAAAAAGAAAGAGCCCTGTTGCAAGTGAAGCTGGAGC
AGAAGCAGCAGGAGGCTGAGAGGAGGGACGCCATGTATCAGACAGAGCTTGAAGGGCAGAGGGACCTGGT
CCAGGCCATGAAAAGGAGGGTGTTGGAACTGATCCATGAGAAGGACCTTCAGTGGCAGAGACTCCAGCAG
CTGTCTACTGTGGCCCCTGGACACTGCATAGGCTGCAACAAGGTCTTCAGGCGTCTGTCTCGGCGGTATC
CTTGCAGGCTCTGTGGAGGCCTGGTTTGCCACGCCTGCTCTGTAGACTACAAGAAGAGAGAGCGTTGCTG
CCCAACCTGTGCCCAGCAGGAAGAAATCCAGGACACCTGA

Translation (479 aa):
MSFICSQDKLKTSLGKGRAFIRLCLARGQLAESMQLCLLNPQLTREWYGPRSPLLCAELQEDILDSLYAL
NGVAFNLDLQRPDLDEAWPMFSESRCSSPSRTGKRRPGKPKGFPEEVRCSRGEQLQEPDTGGTSCLQDAT
REDRTPDLCKPLQPSHLPTFLEEKREDSRSLSCPQSTWETEREGFQLDQKDGGPKPRKFLENSTASIQQQ
RSRAKDVKMQLTGRKVEGKGSLSGTEDQRTTEGIQKRAADWDLGQGLMAPGLQGREDAELGYRCEWNQPD
VLRQSWVLGTKKSSPTEKPQEWTGVTSGTMQEDGSEVPLQQEVIKDPGYGLQLAKEQAQCQEQLRAQEAE
LQALQEQLSRCQKERALLQVKLEQKQQEAERRDAMYQTELEGQRDLVQAMKRRVLELIHEKDLQWQRLQQ
LSTVAPGHCIGCNKVFRRLSRRYPCRLCGGLVCHACSVDYKKRERCCPTCAQQEEIQDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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