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Report for CCDS1506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1506.1 Public Homo sapiens 1 ATF3 24 110 108 CCDS HistoryNCBI Gene:467Re-query CCDS DB by CCDS ID:1506.1Re-query CCDS DB by GeneID:467See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1506.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341491.9 ENSP00000344352.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341491.9Link to Ensembl Protein Viewer:ENSP00000344352.4Re-query CCDS DB by Nucleotide ID:ENST00000341491Re-query CCDS DB by Protein ID:ENSP00000344352
Original member Current member EBI ENST00000366987.6 ENSP00000355954.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366987.6Link to Ensembl Protein Viewer:ENSP00000355954.2Re-query CCDS DB by Nucleotide ID:ENST00000366987Re-query CCDS DB by Protein ID:ENSP00000355954
Original member Current member NCBI NM_001030287.4 NP_001025458.1 Accepted alive Link to Nucleotide Sequence:NM_001030287.4Link to Protein Sequence:NP_001025458.1Re-query CCDS DB by Nucleotide ID:NM_001030287Re-query CCDS DB by Protein ID:NP_001025458Link to BLAST:NP_001025458.1
Original member Current member NCBI NM_001674.4 NP_001665.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001674.4Link to Protein Sequence:NP_001665.1Re-query CCDS DB by Nucleotide ID:NM_001674Re-query CCDS DB by Protein ID:NP_001665Link to BLAST:NP_001665.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025458.1 181 P18847-1 181 100% 0 0
NP_001665.1 181 P18847-1 181 100% 0 0

Chromosomal Locations for CCDS 1506.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 212615022 212615261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212618127 212618234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212619358 212619555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGATGCTTCAACACCCAGGCCAGGTCTCTGCCTCGGAAGTGAGTGCTTCTGCCATCGTCCCCTGCCTGT
CC
CCTCCTGGGTCACTGGTGTTTGAGGATTTTGCTAACCTGACGCCCTTTGTCAAGGAAGAGCTGAGGTT
T
GCCATCCAGAACAAGCACCTCTGCCACCGGATGTCCTCTGCGCTGGAATCAGTCACTGTCAGCGACAGA
CCC
CTCGGGGTGTCCATCACAAAAGCCGAGGTAGCCCCTGAAGAAGATGAAAGGAAAAAGAGGCGACGAG
AA
AGAAATAAGATTGCAGCTGCAAAGTGCCGAAACAAGAAGAAGGAGAAGACGGAGTGCCTGCAGAAAGA
G
TCGGAGAAGCTGGAAAGTGTGAATGCTGAACTGAAGGCTCAGATTGAGGAGCTCAAGAACGAGAAGCAG
CAT
TTGATATACATGCTCAACCTTCATCGGCCCACGTGTATTGTCCGGGCTCAGAATGGGAGGACTCCAG
AA
GATGAGAGAAACCTCTTTATCCAACAGATAAAAGAAGGAACATTGCAGAGCTAA


Translation (181 aa):
MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSSALESVTVSDR
P
LGVSITKAE
VAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQ
H
LIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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