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Report for CCDS1507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1507.1 Public Homo sapiens 1 GARIN4 24 110 108 CCDS HistoryNCBI Gene:149647Re-query CCDS DB by CCDS ID:1507.1Re-query CCDS DB by GeneID:149647See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1507.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294829.5 ENSP00000294829.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000294829.5Link to Ensembl Protein Viewer:ENSP00000294829.3Re-query CCDS DB by Nucleotide ID:ENST00000294829Re-query CCDS DB by Protein ID:ENSP00000294829
Original member Current member NCBI NM_153606.4 NP_705834.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153606.4Link to Protein Sequence:NP_705834.2Re-query CCDS DB by Nucleotide ID:NM_153606Re-query CCDS DB by Protein ID:NP_705834Link to BLAST:NP_705834.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705834.2 594 Q8IYT1 594 100% 0 0

Chromosomal Locations for CCDS 1507.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 212624878 212626662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGAATGCTGATTTTCTGCTGCCGTATTATACGGCCCAGAGTGGCTCCAGCATGAGCATGTTCAACACCA
CCATGGGGAAACTGCAGCGACAACTGTACAAGGGGGAGTACGATATATTCAAGTATGCACCGATATTTGA
GAGCGACTTTATCCAGATCACCAAAAGGGGAGAAGTGATTGATGTGCACAACCGTGTCCGTATGGTGACC
ATGGGCATTGCACGTACCAGCCCCATCCTCCCACTCCCAGATGTCATGCTACTGGCACGACCGGCCACCG
GCTGCGAAGAGTATGCTGGACATGGCCAGGCCACCAAGAGAAAAAAACGCAAGGCAGCAAAGAACTTAGA
GCTCACCAGGCTTCTGCCCCTGAGGTTTGTACGGATCTCTGTTCAAGACCATGAGAAACAACAGCTGCGC
CTGAAGTTCGCCACTGGCAGATCTTGCTATCTGCAATTGTGTCCCGCTCTTGACACACGGGATGACCTCT
TTGCCTATTGGGAAAAACTAATTTACCTCTTGCGGCCACCCATGGAGAGTAACAGCAGTACCTGTGGCAT
TCCAGCTGAAGACATGATGTGGATGCCTGTGTTTCAGGAAGACAGGAGGAGCCTGGGAGCCGTGAACCTT
CAAGGAAAGGGGGATCAGGACCAGGTCAGCATCCAAAGCCTCCACATGGTCTCTGAGGTGTGTGGGGCCA
CCTCTGCTGCTTATGCTGGAGGGGAGGGACTCCAAAATGACTTTAACAAACCCACTAATGTGCTCAATGC
ATCCATCCCCAAAACATCTACAGAACTTGCTGAGGAGCCAGCAACAGGGGGGATTAAAGAGGCAGCAGCA
GCAGGGGCAGCTGCAGGGGCAGCAACAGGCACCGTAGCAGGTGCCTTGAGTGTGGCAGCAGCCAATTCTG
CCCCTGGACAGGTGAGCGCAGCCATAGCTGGGGCGGCCACCATCGGTGCAGGAGGAAACAAAGGCAACAT
GGCCCTTGCAGGCACTGCCAGCATGGCTCCAAACAGCACGAAGGTGGCTGTGGCAGGGGCTGCAGGCAAG
TCCTCAGAGCATGTTTCCAGCGCATCCATGAGCCTTTCCCGAGAGGGCAGTGTGAGCCTGGCCATTGCAG
GAGTAGTACTGACCAGCAGGACAGCTGCAGAAGCAGACATGGATGCAGCAGCGGGACCTCCCGTCTCCAC
CCGGCAGAGCAAGAGCAGCCTGAGTGGACAGCATGGAAGGGAGCGAACCCAGGCCAGCGCTGAAGGCTGC
AAGGAGGGGAGGGAAAGAAGGGAAAAGGACAGGGCTCTCGGAAGGAGTTCCCATCGCCGCAGGACAGGTG
AAAGCCGCCACAAAACAAGGGGAGACAAGATTGCCCAAAAGTCCTCCAGCAGGTCCTCATTCAGCCACAG
AGCCAATAGAGATGACAAAAAGGAGAAAGGCTGTGGCAACCCGGGGAGCAGCAGGCACAGGGACTCGCAT
AAAGGTGTCAGCCACACGCCCATCTCAAAGGAGTCCAGGACCTCTCACAAATCTGGGAGGAGCTTATGGA
CCACCAGTTCCGGTTCCAGCAAGGGACTTGGCAGGGTCAGCTCTTTCCTGAGGAACGTCAGAGCCAACCT
TACTACAAAAGTAGTGGGCACACCACATGGCAGAGATGTGAACGTCATGGCTAAGATGGCGGAGAGGAGC
ACCAACGTGGCCATCGCCGAGACAGCAGAGGGTGGCCAGGGGCTGGAGACGGTTGGTTCTATGACACCGG
ACATCATGGAGACAGTGACCTTTGAAGCCCATTAA

Translation (594 aa):
MNADFLLPYYTAQSGSSMSMFNTTMGKLQRQLYKGEYDIFKYAPIFESDFIQITKRGEVIDVHNRVRMVT
MGIARTSPILPLPDVMLLARPATGCEEYAGHGQATKRKKRKAAKNLELTRLLPLRFVRISVQDHEKQQLR
LKFATGRSCYLQLCPALDTRDDLFAYWEKLIYLLRPPMESNSSTCGIPAEDMMWMPVFQEDRRSLGAVNL
QGKGDQDQVSIQSLHMVSEVCGATSAAYAGGEGLQNDFNKPTNVLNASIPKTSTELAEEPATGGIKEAAA
AGAAAGAATGTVAGALSVAAANSAPGQVSAAIAGAATIGAGGNKGNMALAGTASMAPNSTKVAVAGAAGK
SSEHVSSASMSLSREGSVSLAIAGVVLTSRTAAEADMDAAAGPPVSTRQSKSSLSGQHGRERTQASAEGC
KEGRERREKDRALGRSSHRRRTGESRHKTRGDKIAQKSSSRSSFSHRANRDDKKEKGCGNPGSSRHRDSH
KGVSHTPISKESRTSHKSGRSLWTTSSGSSKGLGRVSSFLRNVRANLTTKVVGTPHGRDVNVMAKMAERS
TNVAIAETAEGGQGLETVGSMTPDIMETVTFEAH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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