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Report for CCDS15146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15146.1 Public Mus musculus 1 Arl4c 23 108 98 CCDS HistoryNCBI Gene:320982Re-query CCDS DB by CCDS ID:15146.1Re-query CCDS DB by GeneID:320982See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051236.10 ENSMUSP00000057085.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051236.10Link to Ensembl Protein Viewer:ENSMUSP00000057085.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000051236Re-query CCDS DB by Protein ID:ENSMUSP00000057085
Original member Current member EBI ENSMUST00000159814.1 ENSMUSP00000124344.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159814.1Link to Ensembl Protein Viewer:ENSMUSP00000124344.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159814Re-query CCDS DB by Protein ID:ENSMUSP00000124344
Original member Current member EBI ENSMUST00000187810.1 ENSMUSP00000139499.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187810.1Link to Ensembl Protein Viewer:ENSMUSP00000139499.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187810Re-query CCDS DB by Protein ID:ENSMUSP00000139499
Original member Current member NCBI NM_177305.4 NP_796279.2 Accepted alive Link to Nucleotide Sequence:NM_177305.4Link to Protein Sequence:NP_796279.2Re-query CCDS DB by Nucleotide ID:NM_177305Re-query CCDS DB by Protein ID:NP_796279Link to BLAST:NP_796279.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796279.2 192 P61208 192 100% 0 0

Chromosomal Locations for CCDS 15146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 88701086 88701664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGGCAACATCTCCTCCAACATCTCGGCCTTCCAGTCTCTGCACATCGTTATGCTGGGCTTGGACTCGG
CCGGCAAGACTACGGTGCTCTACCGGCTCAAGTTCAACGAATTCGTGAACACTGTGCCCACTATCGGCTT
CAACACCGAGAAGATCAAACTGAGCAACGGCACTGCCAAGGGCATCAGCTGCCACTTCTGGGACGTGGGC
GGCCAGGAGAAGCTACGGCCGCTGTGGAAGTCCTACAGCCGCTGCACGGACGGCATCATCTACGTGGTGG
ATTCGGTGGACGTGGACCGGCTGGAGGAGGCCAAGACGGAGCTGCACAAGGTGACCAAGTTTGCGGAGAA
CCAGGGCACACCGCTCCTGGTTATCGCCAACAAGCAGGATCTGCCTAAGTCGCTGCCGGTGGCCGAGATT
GAGAAGCAACTGGCGCTGCACGAGCTCATCCCGGCCACCACCTACCATGTCCAGCCGGCGTGCGCCATCA
TCGGCGAGGGCCTCACCGAGGGCATGGACAAGCTCTATGAGATGATCCTGAAACGCAGGAAGTCTCTCAA
GCAGAAGAAGAAGCGGTAA

Translation (192 aa):
MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWDVG
GQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEI
EKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKRRKSLKQKKKR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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