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Report for CCDS15184.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15184.1 Public Mus musculus 1 Agxt 23 108 98 CCDS HistoryNCBI Gene:11611Re-query CCDS DB by CCDS ID:15184.1Re-query CCDS DB by GeneID:11611See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15184.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027491.6 ENSMUSP00000027491.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027491.6Link to Ensembl Protein Viewer:ENSMUSP00000027491.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027491Re-query CCDS DB by Protein ID:ENSMUSP00000027491
Original member Current member NCBI NM_016702.3 NP_057911.2 Accepted alive Link to Nucleotide Sequence:NM_016702.3Link to Protein Sequence:NP_057911.2Re-query CCDS DB by Nucleotide ID:NM_016702Re-query CCDS DB by Protein ID:NP_057911Link to BLAST:NP_057911.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057911.2 414 O35423-1 414 100% 0 0

Chromosomal Locations for CCDS 15184.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 93135294 93135524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93135609 93135801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93137295 93137359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93137900 93138000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93139281 93139351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93140322 93140406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93141314 93141409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93142068 93142137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93144055 93144150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93144511 93144639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93145060 93145167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGTTCCGGATGTTGGCCAAGGCCAGTGTGACGCTGGGCTCCAGAGCGGCAGGTTGGGTCCGGACCATGG
GCTCGTATCAGCTGCTGGTGCCACCGCCAGAGGCCCTGAGCAAGCCCCTGTCAGTTCCTACGAGGCTCCT
GTTGGGTCCGGGGCCCTCCAACCTGGCTCCCCGTGTGCTGGCGGCGGGAAGTCTGAGAATGATTGGCCAC
ATGCAAAAAGAGATGCTTCAGATCATGGAGGAGATCAAGCAAGGCATCCAGTATGTGTTCCAGACCAGGA
ACCCCCTCACACTGGTTGTCAGCGGTTCAGGGCACTGCGCCATGGAGACTGCCCTGTTCAACCTCCTAGA
GCCTGGGGACTCCTTTCTAACCGGAACCAATGGCATCTGGGGAATGCGGGCTGCAGAGATTGCTGATCGC
ATTGGAGCCCGTGTGCACCAGATGATCAAGAAGCCTGGAGAACATTATACACTGCAGGAGGTGGAGGAGG
GCCTGGCCCAACACAAACCGGTATTGCTGTTCCTGGTCCACGGGGAGTCATCCACTGGCGTGGTGCAGCC
CCTGGATGGTTTTGGGGAGCTCTGCCATAGGTACCAGTGCCTACTCCTGGTGGACTCAGTGGCATCCCTG
GGCGGGGTTCCTATCTACATGGACCAACAAGGCATTGACATCATGTACTCTAGCTCTCAGAAGGTCCTGA
ATGCCCCACCAGGGATCTCCCTCATCTCCTTCAACGACAAGGCCAAATACAAGGTCTACTCCCGGAAGAC
AAAGCCAGTCTCCTTCTACACAGACATCACATACTTGGCCAAATTGTGGGGATGTGAGGGCGAGACCAGA
GTAATTCATCATACCACACCTGTCACCAGCTTATACTGCCTGAGGGAGAGCCTGGCACTCATTGCAGAGC
AGGGCCTGGAGAATTGCTGGCGGCGTCACAGGGAGGCTACAGCACATCTGCACAAACACCTGCAGGAGAT
GGGCTTAAAGTTCTTTGTGAAGGATCCGGAAATCCGGCTACCCACAATCACCACCGTGACTGTGCCTGCC
GGCTACAACTGGAGGGACATCGTCAGCTATGTGCTGGACCACTTCAGCATTGAAATCTCTGGGGGTCTTG
GGCCCACTGAGGAGAGGGTGCTACGGATTGGCCTCCTGGGCTACAACGCCACCACTGAGAATGTGGACCG
TGTGGCCGAGGCCCTGAGGGAGGCCCTGCAGCATTGTCCTAAGAACAAGTTGTGA

Translation (414 aa):
MFRMLAKASVTLGSRAAGWVRTMGSYQLLVPPPEALSKPLSVPTRLLLGPGPSNLAPRVLAAGSLRMIGH
MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADR
IGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASL
GGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETR
VIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPA
GYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPKNKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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