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Report for CCDS15206.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15206.1 Public Mus musculus 1 Relch 23 108 98 CCDS HistoryNCBI Gene:227446Re-query CCDS DB by CCDS ID:15206.1Re-query CCDS DB by GeneID:227446See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15206.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039173.12 ENSMUSP00000039178.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039173.12Link to Ensembl Protein Viewer:ENSMUSP00000039178.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039173Re-query CCDS DB by Protein ID:ENSMUSP00000039178
Original member Current member NCBI NM_173187.4 NP_775279.2 Accepted alive Link to Nucleotide Sequence:NM_173187.4Link to Protein Sequence:NP_775279.2Re-query CCDS DB by Nucleotide ID:NM_173187Re-query CCDS DB by Protein ID:NP_775279Link to BLAST:NP_775279.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775279.2 1216 Q148V7-1 1216 99.9178% 0 1

Chromosomal Locations for CCDS 15206.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 105664108 105664633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105678163 105678252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105686949 105687020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105687130 105687185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105687282 105687395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105691906 105692109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105692212 105692303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105692884 105693177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105695428 105695503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105696501 105696596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105703931 105704043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105713849 105713939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105716778 105716849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105718775 105718915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105719452 105719616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105721268 105721415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105725649 105725805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105726343 105726466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105727940 105727988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105731201 105731280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105734518 105734624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105735923 105736022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105740435 105740517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105741297 105741360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105743211 105743349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105746069 105746185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105750322 105750410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105750973 105751043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 105753503 105753623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3651 nt):
ATGGCGGCGATGGCGCCCGGAGGTGGTGGCAGTGGTAGCGGAGTAAATCCTTTCCTCAGTGATTCGGATG
AGGACGACGACGAGGTAGCGGCAACCGAGGACCGGCGGGCAGGACTTCGGCTGGGTGCCGGGGTCGGCCT
AGATCCTGGTTCTGCAGGCTCCCTGTCGCCACAGGACCCCATGGCCCTGGGAAGCAGCGCGCGGCCGGGG
CTCGCTGTGGAGATGTCCGCCGCCCCGGCGGCTCCGGGGGGCAGCGGGGAGACCCCTGCCCGATTGTCAA
TCGATGCCATCGCCGCTCAGCTGTTGCGCGATCAATACTTGCTGACCGCCCTGGAGCTGCACACCGAGCT
GTTGGAGAGCGGCCGCGAGCTACCACGACTGCGCGATTACTTCTCCAATCCTGGCAACTTCGAGAGGCAG
AGTGGGACCCCCCCAGGGATGGGGGCGCCCGGGATCCCTGGCGCCTCCATCGTCGGAGGCGCTGGAGGTC
GGGAACCGAGTACGACGTCGGGCGGAGGACAGCTCAATCGAGCTGGGAGCATTAGTACTCTTGACTCATT
AGACTTTGCAAGATATTCAGATGATGGTAACAGGGAAACAGATGAAAGAGTGGCGGTCCTGGAGTTTGAA
CTACGGAAAGCCAAGGAGACCATTCAGGCCCTCCGAGCCAACCTAACAAAGGCTGCAGAACATGAAGTTC
CTTTACAGGAACGAAAAAATTATAAATCAAGTCCTGAAATTCAGGAGCCAATCAAACCTCTTGAAAAGAG
AGCTCTCAACTTCCTAGTCAATGAGTTTTTGTTAAAGAATAACTACAAGCTTACATCAATAACCTTTTCA
GATGAAAATGATGATCAGGATTTTGAATTATGGGATGATGTAGGATTAAACATTCCCAAACCCCCAGACT
TGTTACAACTTTACCGAGACTTTGGAAATCATCAAGTGACTGGGAAAGATCTTGTGGATGTGGCCAGTGG
AGTAGATGAAGATGAATTAGAGGCTCTTACACCAATTTTAGGCAACGTCCCTCCAACCCTTGATACTCCC
CTGCCTATAGAGAACACCTTGCTAGTACAGAAATTAGAAGATAAAATTAGTTTATTAAATAATGAAAAAT
GGTCATTGATGGAGCAAATCAGAAGGCTTGAAAGTGAGATGGACATCCTCAAAGCTGAACACTTTGCCAC
CCCAGCAGTTGGTGATTCTGTTCAGCCTTCCTTGGTTTGGTCTTCCCAAAAGGATTCTGAAGACAATAGA
CAAAGCCCAGCTGTAAATAGTTCAGACCAGGAAAAAACCAAGGATGTTCATCTTGAAATACCAGATGCAG
CTGATTCCTTTATTCCTAAAGAGAATTCGTCAGGTTCTTTCCCCAGGAAGGAAAGAGAAGAGCTGCCACC
TTCTTCTGTATCAAATAAAACCACGCTCCATTTCGATCAGCCCAATAGGAAATTGTCACCTGCTTTCCAC
CAAGCACTACTCTCTTTTTGTCGAATGTCAGCAGATAGTCGGTTAGGATCAGAGGTGTCTAGGATTGCAG
ACAGTGAAAAAAGTGTTATGTTAATGCTGGGACGCTGCCTGCCACACATTGTTCCTAATGTGCTGTTGGC
AAAAAGAGAGGAGTTGATTCCTCTCATATTGTGTACAGCATGCCTGCACCCTGAACCTAAAGAAAGAGAC
CAGCTCCTCCATATCCTCTTCAACCTGATCAAGAGGCCAGATGATGAGCAAAGGCAAATGATACTGACAG
GATGTGTGGCATTTGCACGTCATGTTGGACCAACACGTGTGGAGGCTGAACTTTTACCTCAGTGTTGGGA
ACAGATTAATCACAAATATCCAGAAAGACGACTGCTCGTGGCAGAGTCCTGTGGAGCATTGGCACCTTAC
CTTCCTAAAGAAATCCGTAGTTCCCTGGTTCTTTCAATGTTGCAACAGATGTTAATGGAAGATAAGGCTG
ATTTGGTAAGAGAAGCTGTGATTAAAAGCCTGGGTATCATTATGGGCTACATTGATGATCCTGACAAATA
TCAACAGGGCTTTGAATTGTTGCTCTCTGCCCTGGGTGATCCCTCAGAAAGAGTTGTTAGTGCAACACAC
CAAGTATTTTTACCAGCCTATGCTGCCTGGACAACTGAACTTGGAAACTTACAGTCTCATCTTATACCTA
CACTACTGAACAAGATTGAAAAGCTTCTCAGGGAAGGAGAGCACGGGCTGGACGAACACAAGCTCCACAT
GTATCTTTCTGCCTTGCAGTCCTTGATCCCATCTCTCTTTGCATTAGTGCTACAGAACGCACCTTTCTCC
AGCAAAGCCAAGCTGCATGGTGAAGTACCACATATTGAAGTGACTAGGTTCCCTCGGCCTATGTCACCTC
TGCAAGATGTGTCTACTATTATTGGAAGTCGTGAGCAATTGGCAGTGCTACTACAACTTTATGATTACCA
ACTGGAACATGAAGGCACAACAGGCTGGGAGAGTTTACTCTGGGTTGTCAATCAATTGTTGCCACAGCTT
ATAGAAATAGTGGGCAAAATTAATGTAACCTCAACTGCCTGTGTCCATGAATTCTCCAGATTTTTCTGGC
GTCTTTGCCGGACATTTGGCAAAATTTTTACAAACACTAAGGTAAAACCCCAGTTCCAAGAGATTTTAAG
ACTCTCTGAAGAAAATATTGATTCCTCAGCAGGAAATGGGGTCCTCACTAAAGCTACTGTCCCCATTTAT
GCAACAGGAGTCCTCACGTGTTACATTCAGGAAGAGGACCGAAAGCTGTTAGTTGGCTTCTTGGAAGATG
TGATGACACTGCTTTCACTGTCTCATGCTCCTCTTGACAGCCTGAAGGCTTCTTTTGTGGAACTTGGTGC
AAACCCGGCCTATCATGAGCTGCTGCTAACTGTTCTGTGGTATGGTGTTGTTCATACTTCTGCACTTGTC
AGGTGTACTGCTGCTAGGATGTTTGAGCTGTTGGTGAAGGGGGTGAATGAGACTCTGGTAGCTCAGAGGG
TTGTTCCTGCTCTCATTACTCTCTCCAGTGACCCTGAAATCTCTGTCAGGATTGCTACAATCCCAGCATT
TGGCACTATTATGGAAACAGTTATTCAGAGAGAGTTGCTAGAAAGAGTGAAGATGCAGTTGGCTTCTTTC
CTGGAAGACCCTCAGTACCAAGACCAGCATTCTTTGCATACAGAGGTCATCCGAACATTTGGCAGAGTCG
GGCCTAATGCAGAACCCCGGTTCCGAGATGAGTTTGTTATACCACATTTACATAAATTAGCCTTGGTGAA
CAACTTACAAATTGTAGATTCGAAAAAACTGGACATTGCGACTCATCTTTTTGAAGCCTACAGTGCACTC
TCCTGTTGTTTCATTTCAGAGGATTTAATGGTAAATCACTTCTTACCTGGCCTCAGATGTTTACGGACTG
ACATGGAACATCTGTCTCCAGAACATGAGGTTATTTTAAGTTCCATGATAAAAGAATGTGAACAAAAAGT
AGAAAACAAGACTGTCCAAGAGCCTCCAGGCTCAATGTCAATTGCTGCAAGTTTAGTGAGTGAAGACACA
AAGACCAAGTTTTTGAACAAAATGGGCCAGTTGACAACATCAGGTGCCATGCTGGCCAATGTGTTTCAGA
GAAAGAAGTAG

Translation (1216 aa):
MAAMAPGGGGSGSGVNPFLSDSDEDDDEVAATEDRRAGLRLGAGVGLDPGSAGSLSPQDPMALGSSARPG
LAVEMSAAPAAPGGSGETPARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQ
SGTPPGMGAPGIPGASIVGGAGGREPSTTSGGGQLNRAGSISTLDSLDFARYSDDGNRETDERVAVLEFE
LRKAKETIQALRANLTKAAEHEVPLQERKNYKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFS
DENDDQDFELWDDVGLNIPKPPDLLQLYRDFGNHQVTGKDLVDVASGVDEDELEALTPILGNVPPTLDTP
LPIENTLLVQKLEDKISLLNNEKWSLMEQIRRLESEMDILKAEHFATPAVGDSVQPSLVWSSQKDSEDNR
QSPAVNSSDQEKTKDVHLEIPDAADSFIPKENSSGSFPRKEREELPPSSVSNKTTLHFDQPNRKLSPAFH
QALLSFCRMSADSRLGSEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKREELIPLILCTACLHPEPKERD
QLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAELLPQCWEQINHKYPERRLLVAESCGALAPY
LPKEIRSSLVLSMLQQMLMEDKADLVREAVIKSLGIIMGYIDDPDKYQQGFELLLSALGDPSERVVSATH
QVFLPAYAAWTTELGNLQSHLIPTLLNKIEKLLREGEHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFS
SKAKLHGEVPHIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEHEGTTGWESLLWVVNQLLPQL
IEIVGKINVTSTACVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNGVLTKATVPIY
ATGVLTCYIQEEDRKLLVGFLEDVMTLLSLSHAPLDSLKASFVELGANPAYHELLLTVLWYGVVHTSALV
RCTAARMFELLVKGVNETLVAQRVVPALITLSSDPEISVRIATIPAFGTIMETVIQRELLERVKMQLASF
LEDPQYQDQHSLHTEVIRTFGRVGPNAEPRFRDEFVIPHLHKLALVNNLQIVDSKKLDIATHLFEAYSAL
SCCFISEDLMVNHFLPGLRCLRTDMEHLSPEHEVILSSMIKECEQKVENKTVQEPPGSMSIAASLVSEDT
KTKFLNKMGQLTTSGAMLANVFQRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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