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Report for CCDS15233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15233.1 Public Mus musculus 1 C1ql2 23 108 98 CCDS HistoryNCBI Gene:226359Re-query CCDS DB by CCDS ID:15233.1Re-query CCDS DB by GeneID:226359See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15233.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037286.9 ENSMUSP00000037257.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037286.9Link to Ensembl Protein Viewer:ENSMUSP00000037257.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037286Re-query CCDS DB by Protein ID:ENSMUSP00000037257
Original member Current member NCBI NM_207233.1 NP_997116.1 Accepted alive Link to Nucleotide Sequence:NM_207233.1Link to Protein Sequence:NP_997116.1Re-query CCDS DB by Nucleotide ID:NM_207233Re-query CCDS DB by Protein ID:NP_997116Link to BLAST:NP_997116.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997116.1 287 Q8CFR0 287 100% 0 0

Chromosomal Locations for CCDS 15233.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 120341118 120341801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120342395 120342574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGCACTGGGGCTGCTGATCGCGGTGCCTCTGCTGCTGCAGGCGGCGCCCCCCGGAGCGGCTCACTACG
AGATGCTGGGCACCTGCCGCATGATCTGTGACCCATACAGCGTCGCTCCCGCAGGGGGACCCGCGGGCGC
CAAGGCTCCACCGCCGGGACCCAGTACCGCTGCCCTGGAAGTTATGCAGGACCTCAGCGCCAACCCCCCG
CCTCCGTTTATCCAGGGACCAAAGGGTGATCCGGGGCGACCAGGCAAGCCAGGGCCTCGGGGTCCTCCTG
GAGAGCCAGGGCCTCCTGGGCCCAGGGGTCCCCCGGGAGAGAAAGGAGACTCGGGGAGGCCAGGGCTACC
CGGACTGCAGTTGACAACCAGCGCGGCCGGTGGCGTTGGAGTGGTGAGTGGCGGAACCGGGGGCGGTGGC
GACACGGAGGGAGAAGTGACCAGTGCGCTGAGCGCCGCCTTCAGCGGTCCCAAGATCGCCTTCTACGTGG
GACTCAAGAGCCCCCACGAAGGCTACGAGGTGCTCAAGTTCGACGACGTGGTCACCAATCTTGGCAATCA
CTACGACCCCACTACAGGCAAGTTCAGCTGCCAGGTGCGGGGCATCTACTTCTTCACGTACCACATTCTC
ATGCGTGGCGGCGACGGAACCAGCATGTGGGCGGATCTCTGCAAGAACGGGCAGGTGCGAGCCAGCGCCA
TAGCCCAGGACGCGGACCAGAATTACGACTACGCCAGCAACAGCGTGGTACTGCACCTGGATTCAGGCGA
TGAAGTCTACGTGAAGCTGGACGGCGGGAAGGCTCACGGCGGCAACAATAACAAGTACAGCACGTTCTCG
GGCTTCCTCCTGTATCCGGATTAG

Translation (287 aa):
MALGLLIAVPLLLQAAPPGAAHYEMLGTCRMICDPYSVAPAGGPAGAKAPPPGPSTAALEVMQDLSANPP
PPFIQGPKGDPGRPGKPGPRGPPGEPGPPGPRGPPGEKGDSGRPGLPGLQLTTSAAGGVGVVSGGTGGGG
DTEGEVTSALSAAFSGPKIAFYVGLKSPHEGYEVLKFDDVVTNLGNHYDPTTGKFSCQVRGIYFFTYHIL
MRGGDGTSMWADLCKNGQVRASAIAQDADQNYDYASNSVVLHLDSGDEVYVKLDGGKAHGGNNNKYSTFS
GFLLYPD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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