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Report for CCDS1525.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1525.1 Public Homo sapiens 1 MTARC2 24 110 108 CCDS HistoryNCBI Gene:54996Re-query CCDS DB by CCDS ID:1525.1Re-query CCDS DB by GeneID:54996See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1525.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366913.8 ENSP00000355880.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366913.8Link to Ensembl Protein Viewer:ENSP00000355880.3Re-query CCDS DB by Nucleotide ID:ENST00000366913Re-query CCDS DB by Protein ID:ENSP00000355880
Original member Current member NCBI NM_001317338.2 NP_001304267.1 Accepted alive Link to Nucleotide Sequence:NM_001317338.2Link to Protein Sequence:NP_001304267.1Re-query CCDS DB by Nucleotide ID:NM_001317338Re-query CCDS DB by Protein ID:NP_001304267Link to BLAST:NP_001304267.1
Original member Current member NCBI NM_017898.5 NP_060368.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017898.5Link to Protein Sequence:NP_060368.2Re-query CCDS DB by Nucleotide ID:NM_017898Re-query CCDS DB by Protein ID:NP_060368Link to BLAST:NP_060368.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304267.1 335 Q969Z3-1 335 100% 0 0
NP_060368.2 335 Q969Z3-1 335 100% 0 0

Chromosomal Locations for CCDS 1525.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 220748532 220748803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 220754947 220755120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 220761658 220761820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 220762910 220763050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 220780018 220780079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 220780168 220780239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 220781778 220781901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGGCGCTTCCAGCTCCTCCGCGCTGGCCCGCCTCGGCCTCCCAGCCCGGCCCTGGCCCAGGTGGCTCG
GGGTCGCCGCGCTAGGACTGGCCGCCGTGGCCCTGGGGACTGTCGCCTGGCGCCGCGCATGGCCCAGGCG
GCGCCGGCGGCTGCAGCAGGTGGGCACCGTGGCGAAGCTCTGGATCTACCCGGTGAAATCCTGCAAAGGG
GTGCCGGTGAGCGAGGCTGAGTGCACGGCCATGGGGCTGCGCAGCGGCAACCTGCGGGACAGGTTTTGGC
TGGTGATTAAGGAAGATGGACACATGGTCACTGCCCGACAGGAGCCTCGCCTCGTGCTCATCTCCATCAT
TTATGAGAATAACTGCCTGATCTTCAGGGCTCCAGACATGGACCAGCTGGTTTTGCCTAGCAAGCAGCCT
TCCTCAAACAAACTCCACAACTGCAGGATATTTGGCCTTGACATTAAAGGCAGAGACTGTGGCAATGAGG
CAGCTAAGTGGTTCACCAACTTCTTGAAAACTGAAGCGTATAGATTGGTTCAATTTGAGACAAACATGAA
GGGAAGAACATCAAGAAAACTTCTCCCCACTCTTGATCAGAATTTCCAGGTGGCCTACCCAGACTACTGC
CCGCTCCTGATCATGACAGATGCCTCCCTGGTAGATTTGAATACCAGGATGGAGAAGAAAATGAAAATGG
AGAATTTCAGGCCAAATATTGTGGTGACCGGCTGTGATGCTTTTGAGGAGGATACCTGGGATGAACTCCT
AATTGGTAGTGTAGAAGTGAAAAAGGTAATGGCATGCCCCAGGTGTATTTTGACAACGGTGGACCCAGAC
ACTGGAGTCATAGACAGGAAACAGCCACTGGACACCCTGAAGAGCTACCGCCTGTGTGATCCTTCTGAGA
GGGAATTGTACAAGTTGTCTCCACTTTTTGGGATCTATTATTCAGTGGAAAAAATTGGAAGCCTGAGAGT
TGGTGACCCTGTGTATCGGATGGTGTAG

Translation (335 aa):
MGASSSSALARLGLPARPWPRWLGVAALGLAAVALGTVAWRRAWPRRRRRLQQVGTVAKLWIYPVKSCKG
VPVSEAECTAMGLRSGNLRDRFWLVIKEDGHMVTARQEPRLVLISIIYENNCLIFRAPDMDQLVLPSKQP
SSNKLHNCRIFGLDIKGRDCGNEAAKWFTNFLKTEAYRLVQFETNMKGRTSRKLLPTLDQNFQVAYPDYC
PLLIMTDASLVDLNTRMEKKMKMENFRPNIVVTGCDAFEEDTWDELLIGSVEVKKVMACPRCILTTVDPD
TGVIDRKQPLDTLKSYRLCDPSERELYKLSPLFGIYYSVEKIGSLRVGDPVYRMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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