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Report for CCDS1527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1527.1 Public Homo sapiens 1 HLX 24 110 108 CCDS HistoryNCBI Gene:3142Re-query CCDS DB by CCDS ID:1527.1Re-query CCDS DB by GeneID:3142See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1527.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366903.8 ENSP00000355870.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366903.8Link to Ensembl Protein Viewer:ENSP00000355870.5Re-query CCDS DB by Nucleotide ID:ENST00000366903Re-query CCDS DB by Protein ID:ENSP00000355870
Original member Current member NCBI NM_021958.4 NP_068777.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021958.4Link to Protein Sequence:NP_068777.1Re-query CCDS DB by Nucleotide ID:NM_021958Re-query CCDS DB by Protein ID:NP_068777Link to BLAST:NP_068777.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068777.1 488 Q14774 488 100% 0 0

Chromosomal Locations for CCDS 1527.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 220879858 220880449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 220881194 220881373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 220882164 220882348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 220884195 220884704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGTTCGCAGCCGGGCTGGCTCCCTTCTACGCCTCCAACTTCAGCCTCTGGTCGGCCGCTTACTGCTCCT
CGGCCGGCCCAGGCGGCTGCTCCTTCCCCTTGGACCCCGCCGCCGTCAAAAAGCCCTCCTTCTGCATCGC
AGACATTCTGCACGCCGGCGTGGGGGATCTGGGGGCGGCCCCGGAGGGCCTGGCAGGGGCCTCGGCCGCC
GCCCTCACCGCGCACTTGGGCTCGGTTCACCCGCACGCCTCTTTCCAAGCGGCGGCCAGATCCCCGCTTC
GACCCACCCCAGTGGTGGCGCCCTCCGAAGTCCCGGCTGGCTTCCCGCAGCGGCTGTCTCCGCTCTCAGC
CGCCTACCACCACCATCACCCGCAACAACAACAGCAGCAGCAACAGCCGCAGCAGCAACAGCCTCCGCCT
CCGCCCCGGGCTGGCGCCCTGCAGCCCCCGGCCTCGGGGACGCGAGTGGTTCCGAACCCCCACCACAGTG
GCTCTGCCCCGGCCCCCTCCAGCAAAGACCTCAAATTTGGAATTGACCGCATTTTATCTGCAGAATTTGA
CCCAAAAGTCAAAGAAGGCAACACGCTGAGAGATCTCACTTCCCTGCTAACCGGTGGGCGGCCCGCCGGG
GTGCACCTCTCAGGCCTGCAGCCCTCGGCCGGCCAGTTCTTCGCATCTCTAGATCCCATTAACGAGGCTT
CTGCAATCCTGAGTCCCTTAAACTCGAACCCAAGAAATTCAGTTCAGCATCAGTTCCAAGACACGTTTCC
AGGTCCCTATGCTGTGCTCACGAAGGACACCATGCCGCAGACGTACAAAAGGAAGCGTTCATGGTCGCGC
GCTGTGTTCTCCAACCTGCAGAGGAAAGGCCTGGAGAAAAGGTTTGAGATTCAGAAGTACGTGACCAAGC
CGGACCGAAAGCAGCTGGCGGCGATGCTGGGCCTCACGGACGCACAGGTGAAGGTGTGGTTCCAGAACCG
GCGGATGAAGTGGCGGCACTCCAAGGAGGCCCAGGCCCAAAAGGACAAGGACAAGGAGGCTGGCGAGAAG
CCATCAGGTGGAGCCCCGGCTGCGGATGGCGAGCAGGACGAGAGGAGCCCCAGCCGTTCTGAAGGCGAGG
CTGAGAGCGAGAGCAGCGACTCCGAGTCCCTGGACATGGCCCCCAGCGACACGGAGCGGACTGAGGGGAG
TGAGCGTTCTCTGCACCAAACAACAGTTATTAAGGCCCCGGTCACTGGCGCCCTCATTACCGCCAGCAGT
GCTGGGAGTGGTGGGAGCAGCGGCGGCGGCGGCAATAGTTTCAGCTTCAGCAGCGCCAGCAGTCTTAGTA
GCAGCAGCACCAGTGCGGGTTGCGCCAGCAGCCTTGGCGGCGGCGGCGCCTCGGAGCTTCTCCCTGCAAC
ACAGCCCACAGCCAGCAGCGCTCCCAAAAGCCCCGAGCCAGCCCAAGGCGCGCTTGGCTGCTTATAG

Translation (488 aa):
MFAAGLAPFYASNFSLWSAAYCSSAGPGGCSFPLDPAAVKKPSFCIADILHAGVGDLGAAPEGLAGASAA
ALTAHLGSVHPHASFQAAARSPLRPTPVVAPSEVPAGFPQRLSPLSAAYHHHHPQQQQQQQQPQQQQPPP
PPRAGALQPPASGTRVVPNPHHSGSAPAPSSKDLKFGIDRILSAEFDPKVKEGNTLRDLTSLLTGGRPAG
VHLSGLQPSAGQFFASLDPINEASAILSPLNSNPRNSVQHQFQDTFPGPYAVLTKDTMPQTYKRKRSWSR
AVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQAQKDKDKEAGEK
PSGGAPAADGEQDERSPSRSEGEAESESSDSESLDMAPSDTERTEGSERSLHQTTVIKAPVTGALITASS
AGSGGSSGGGGNSFSFSSASSLSSSSTSAGCASSLGGGGASELLPATQPTASSAPKSPEPAQGALGCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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