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Report for CCDS15309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15309.1 Public Mus musculus 1 Adipor1 23 108 98 CCDS HistoryNCBI Gene:72674Re-query CCDS DB by CCDS ID:15309.1Re-query CCDS DB by GeneID:72674See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15309.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027727.14 ENSMUSP00000027727.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027727.14Link to Ensembl Protein Viewer:ENSMUSP00000027727.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027727Re-query CCDS DB by Protein ID:ENSMUSP00000027727
Original member Current member EBI ENSMUST00000112237.1 ENSMUSP00000107856.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112237.1Link to Ensembl Protein Viewer:ENSMUSP00000107856.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112237Re-query CCDS DB by Protein ID:ENSMUSP00000107856
Original member Current member NCBI NM_001306069.1 NP_001292998.1 Accepted alive Link to Nucleotide Sequence:NM_001306069.1Link to Protein Sequence:NP_001292998.1Re-query CCDS DB by Nucleotide ID:NM_001306069Re-query CCDS DB by Protein ID:NP_001292998Link to BLAST:NP_001292998.1
Original member Current member NCBI NM_028320.4 NP_082596.2 Accepted alive Link to Nucleotide Sequence:NM_028320.4Link to Protein Sequence:NP_082596.2Re-query CCDS DB by Nucleotide ID:NM_028320Re-query CCDS DB by Protein ID:NP_082596Link to BLAST:NP_082596.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292998.1 375 Q91VH1 375 100% 0 0
NP_082596.2 375 Q91VH1 375 100% 0 0

Chromosomal Locations for CCDS 15309.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 134423015 134423155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134423958 134424074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134424751 134424922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134425909 134426095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134428082 134428269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134431057 134431250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134431530 134431658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGTCTTCCCACAAAGGCTCTGCCGGGGCACAAGGCAATGGGGCTCCTTCTGGTAACAGAGAAGCTGACA
CAGTGGAGCTGGCTGAGCTGGGGCCCCTGCTGGAGGAGAAGGGCAAGCGGGCAGCCAGCAGCCCAGCCAA
GGCTGAGGAAGATCAAGCATGCCCGGTGCCTCAGGAAGAGGAGGAGGAGGTGCGGGTGCTGACGCTTCCT
CTGCAAGCCCACCATGCCATGGAGAAGATGGAGGAGTTCGTGTATAAGGTCTGGGAGGGACGTTGGAGAG
TCATCCCGTATGATGTGCTTCCTGACTGGCTGAAAGACAACGACTACCTGCTACATGGCCACAGACCACC
TATGCCCTCCTTTCGGGCTTGCTTCAAGAGCATCTTCCGCATCCACACAGAGACTGGCAACATCTGGACA
CATCTGCTTGGTTTTGTGCTATTTCTCTTTCTGGGAATCTTGACGATGCTGAGACCAAATATGTACTTCA
TGGCTCCCCTGCAGGAGAAGGTGGTCTTCGGGATGTTCTTCCTGGGCGCGGTGCTCTGCCTCAGTTTCTC
CTGGCTCTTCCACACTGTCTACTGTCATTCAGAGAAGGTCTCTCGGACTTTTTCCAAACTGGACTATTCA
GGGATTGCTCTACTGATTATGGGGAGCTTCGTTCCCTGGCTCTATTACTCCTTCTACTGCTCCCCACAGC
CGCGGCTCATCTACCTCTCCATCGTCTGTGTCCTGGGCATCTCTGCCATCATTGTGGCACAGTGGGACCG
GTTTGCCACTCCCAAGCACCGGCAGACAAGAGCAGGAGTGTTCCTGGGACTTGGCTTGAGTGGTGTTGTA
CCCACCATGCACTTTACTATCGCTGAGGGCTTTGTCAAGGCCACCACGGTGGGCCAGATGGGCTGGTTCT
TCCTCATGGCTGTGATGTACATCACCGGCGCCGGCCTGTATGCTGCTCGGATTCCTGAGCGCTTCTTCCC
TGGAAAATTTGACATCTGGTTCCAGTCTCATCAGATTTTCCACGTCCTGGTGGTGGCAGCAGCTTTCGTC
CACTTCTATGGTGTGTCCAACCTTCAGGAATTCCGTTATGGCCTAGAAGGTGGCTGTACCGACGACTCCC
TTCTCTGA

Translation (375 aa):
MSSHKGSAGAQGNGAPSGNREADTVELAELGPLLEEKGKRAASSPAKAEEDQACPVPQEEEEEVRVLTLP
LQAHHAMEKMEEFVYKVWEGRWRVIPYDVLPDWLKDNDYLLHGHRPPMPSFRACFKSIFRIHTETGNIWT
HLLGFVLFLFLGILTMLRPNMYFMAPLQEKVVFGMFFLGAVLCLSFSWLFHTVYCHSEKVSRTFSKLDYS
GIALLIMGSFVPWLYYSFYCSPQPRLIYLSIVCVLGISAIIVAQWDRFATPKHRQTRAGVFLGLGLSGVV
PTMHFTIAEGFVKATTVGQMGWFFLMAVMYITGAGLYAARIPERFFPGKFDIWFQSHQIFHVLVVAAAFV
HFYGVSNLQEFRYGLEGGCTDDSLL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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