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Report for CCDS15334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15334.1 Public Mus musculus 1 Lhx9 23 108 98 CCDS HistoryNCBI Gene:16876Re-query CCDS DB by CCDS ID:15334.1Re-query CCDS DB by GeneID:16876See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15334.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019374.13 ENSMUSP00000019374.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019374.13Link to Ensembl Protein Viewer:ENSMUSP00000019374.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019374Re-query CCDS DB by Protein ID:ENSMUSP00000019374
Original member Current member NCBI NM_001025565.2 NP_001020736.1 Accepted alive Link to Nucleotide Sequence:NM_001025565.2Link to Protein Sequence:NP_001020736.1Re-query CCDS DB by Nucleotide ID:NM_001025565Re-query CCDS DB by Protein ID:NP_001020736Link to BLAST:NP_001020736.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020736.1 330 Q9WUH2-4 330 100% 0 0

Chromosomal Locations for CCDS 15334.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 138828654 138828710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138832702 138832904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138838343 138838698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138839873 138840075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138841808 138841981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGGAAATAGTGGGGTGCCGAGCCGAAAACAATTCGTGTCCTTTCCGCCCCCCAGCCATGCTCTTCCACG
GAATCTCCGGAGGCCACATCCAAGGTATCATGGAGGAGATGGAGCGCAGATCCAAGACTGAGGCCCGTCT
GACCAAAGGCACTCAGCTCAACGGCCGCGACGCGGGTATGCCCCCTCTCAGCCCGGAGAAGCCTGCTCTG
TGCGCCGGCTGCGGGGGCAAGATCTCCGACAGGTACTATCTGCTGGCCGTAGACAAACAGTGGCATCTTA
GGTGCCTGAAGTGCTGTGAATGTAAGCTGGCTCTGGAATCTGAGCTCACCTGCTTTGCCAAGGACGGTAG
CATTTACTGCAAGGAGGATTATTACAGAAGGTTCTCTGTGCAGAGATGTGCCCGCTGCCACCTTGGCATT
TCCGCCTCTGAGATGGTCATGCGCGCCCGAGACTCTGTCTACCATCTGAGCTGCTTCACTTGTTCCACTT
GCAACAAGACCTTGACCACGGGCGACCATTTCGGGATGAAGGACAGCCTGGTGTACTGCCGCGCACACTT
CGAGACCCTCTTGCAAGGGGAATATCCACCTCAGCTGAGCTACACGGAGCTGGCGGCCAAGAGCGGCGGC
TTGGCTTTGCCTTACTTCAATGGCACTGGCACCGTGCAGAAGGGGCGGCCCCGGAAGCGGAAGAGCCCAG
CTCTGGGAGTGGACATCGTGAATTACAACTCAGGTTGTAATGAGAACGAGGCAGACCACTTGGACCGGGA
CCAGCAGCCTTATCCACCTTCACAGAAGACCAAACGGATGCGAACTTCTTTCAAGCATCACCAGCTCCGG
ACCATGAAATCCTACTTTGCTATCAACCATAACCCAGATGCCAAGGACCTCAAACAGCTTGCTCAAAAAA
CAGGCCTGACCAAAAGAGTTTTACAGGGAGAACAAATCTTGGGGCATTACAGCCAAACATCCCGACGTTT
GAAAATTCCCTAA

Translation (330 aa):
MEIVGCRAENNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKTEARLTKGTQLNGRDAGMPPLSPEKPAL
CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGI
SASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGG
LALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLR
TMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQGEQILGHYSQTSRRLKIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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