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Report for CCDS15375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15375.1 Public Mus musculus 1 Rgs8 23 108 98 CCDS HistoryNCBI Gene:67792Re-query CCDS DB by CCDS ID:15375.1Re-query CCDS DB by GeneID:67792See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15375.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041776.11 ENSMUSP00000045715.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041776.11Link to Ensembl Protein Viewer:ENSMUSP00000045715.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000041776Re-query CCDS DB by Protein ID:ENSMUSP00000045715
Original member Current member EBI ENSMUST00000111810.1 ENSMUSP00000107441.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111810.1Link to Ensembl Protein Viewer:ENSMUSP00000107441.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111810Re-query CCDS DB by Protein ID:ENSMUSP00000107441
Original member Current member EBI ENSMUST00000111812.7 ENSMUSP00000107443.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111812.7Link to Ensembl Protein Viewer:ENSMUSP00000107443.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111812Re-query CCDS DB by Protein ID:ENSMUSP00000107443
Original member Current member NCBI NM_001357525.1 NP_001344454.1 Accepted alive Link to Nucleotide Sequence:NM_001357525.1Link to Protein Sequence:NP_001344454.1Re-query CCDS DB by Nucleotide ID:NM_001357525Re-query CCDS DB by Protein ID:NP_001344454Link to BLAST:NP_001344454.1
Original member Current member NCBI NM_026380.3 NP_080656.2 Accepted alive Link to Nucleotide Sequence:NM_026380.3Link to Protein Sequence:NP_080656.2Re-query CCDS DB by Nucleotide ID:NM_026380Re-query CCDS DB by Protein ID:NP_080656Link to BLAST:NP_080656.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344454.1 180 Q8BXT1 180 100% 0 0
NP_080656.2 180 Q8BXT1 180 100% 0 0

Chromosomal Locations for CCDS 15375.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153667928 153667953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153670783 153670884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153671754 153671818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153690898 153691064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153692725 153692907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGCTGCCTTACTGATGCCACGCAGGAACAAAGGCATGAGGACTCGACTGGGGTGCCTGTCACACAAAT
CAGACTCCTGCAGTGACTTCACTGCCATCCTCCCTGACAAACCCAACCGTGCTCTCAAGAGACTCTCCAC
GGAAGAAGCAACGAGGTGGGCGGAGTCTTTCGATGTGCTTCTCTCTCATAAGTATGGGGTGGCAGCCTTC
CGTGCCTTCTTGAAGACGGAGTTCAGCGAGGAGAACCTGGAGTTCTGGCTGGCCTGCGAGGAGTTCAAGA
AGACCAGGTCAACTGCAAAGCTAGTCACCAAGGCCCACAGGATCTTTGAGGAGTTTGTGGATGTGCAGGC
TCCACGGGAGGTGAATATCGATTTCCAGACCCGAGAGGCCACGAGGAAGAACATGCAAGAGCCATCCCTG
ACTTGTTTTGATCAAGCTCAGGGAAAAGTCCACAGCCTCATGGAGAAAGACTCCTACCCTAGGTTCCTGA
GGTCCAAAATGTACTTAGATCTGCTGTCCCAGAGCCAGAGGAGGCTCAGCTAG

Translation (180 aa):
MAALLMPRRNKGMRTRLGCLSHKSDSCSDFTAILPDKPNRALKRLSTEEATRWAESFDVLLSHKYGVAAF
RAFLKTEFSEENLEFWLACEEFKKTRSTAKLVTKAHRIFEEFVDVQAPREVNIDFQTREATRKNMQEPSL
TCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLLSQSQRRLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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