NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15447.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15447.1 Public Mus musculus 1 Gpa33 23 108 98 CCDS HistoryNCBI Gene:59290Re-query CCDS DB by CCDS ID:15447.1Re-query CCDS DB by GeneID:59290See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15447.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060833.13 ENSMUSP00000060147.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060833.13Link to Ensembl Protein Viewer:ENSMUSP00000060147.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000060833Re-query CCDS DB by Protein ID:ENSMUSP00000060147
Original member Current member EBI ENSMUST00000166860.1 ENSMUSP00000125903.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166860.1Link to Ensembl Protein Viewer:ENSMUSP00000125903.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166860Re-query CCDS DB by Protein ID:ENSMUSP00000125903
Original member Current member NCBI NM_021610.2 NP_067623.1 Accepted alive Link to Nucleotide Sequence:NM_021610.2Link to Protein Sequence:NP_067623.1Re-query CCDS DB by Nucleotide ID:NM_021610Re-query CCDS DB by Protein ID:NP_067623Link to BLAST:NP_067623.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067623.1 319 Q9JKA5 319 99.373% 0 2

Chromosomal Locations for CCDS 15447.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 166130562 166130604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166146639 166146793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166152568 166152784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166157513 166157668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166163773 166163892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166164580 166164715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166165147 166165279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGTTGGGGAAGGCAGGATCTGTGGTGTGGATGTTCTGTGCAATCTGGGTCGCTGCTGATGCTCTTACCG
TGGAAACTACACAGGACATTCTTCGGGCTGCTCGAGGAAGGAGTGTCACCCTCCCGTGCACCTACAACAC
CTATGTTTCAGACCGAGAGGGGTTCATTCAGTGGGATAAGCTTCTCCGAAGTCAGACGGAAAGAGTGGTC
ACCTGGAATTTTGTGACAAAGAAATACATCTATGGGAACCGTTATGAGAATCGAGTGAGAGTATCTAACG
ATGCTGAGTTGTCAAATGCCTCTATCACCATCGACCAGCTGACCATGGACGACAATGGCACCTACGAGTG
CTCCGTGTCACTGATGTCGGACCAGGATGTCAACGCCAAGTCTCGAGTCCGCCTCTTGGTCCTTGTTCCA
CCCTCCAAGCCAGACTGCAGCATCCAAGGGGAGATGGTGATCGGGAACAACATCCAGCTGACATGCCACT
CTGCAGAGGGCTCTCCGAGCCCACAATACAGCTGGAAGAGTTACAACGCCCAGAACCAGCAGCGGCCCCT
CACCCAGCCAGTCTCAGGCGAGCCATTGTTGCTGAAGAACATCTCCACGGAGACAGCGGGTTACTACATC
TGCACCTCCAGCAATGACGTGGGGATAGAGTCCTGCAACATCACCGTGGCACCCAGACCTCCCTCCATGA
ACATTGCGCTGTATGCGGGCATTGCGGGGAGTGTCTTTGTGGCCCTCATCATCATCGGTGTCATTGTCTA
CTGCTGCTGCTGCCGGGAAAAGGATGACAAAGATCAAGACAGGGAGGATGCGCGGCCGAACCGAGCAGCT
TACCAAGTGCCTAAAAAGGAGCAGAAAGAAATTTCCAGAGGGCGGGAAGACGAAGATGACCACAGACATG
AGGATCGGTGGAGCTCGGGGCGTAGCACTCCAGACCAGCCTTTCCAATGA

Translation (319 aa):
MLGKAGSVVWMFCAIWVAADALTVETTQDILRAARGRSVTLPCTYNTYVSDREGFIQWDKLLRSQTERVV
TWNFVTKKYIYGNRYENRVRVSNDAELSNASITIDQLTMDDNGTYECSVSLMSDQDVNAKSRVRLLVLVP
PSKPDCSIQGEMVIGNNIQLTCHSAEGSPSPQYSWKSYNAQNQQRPLTQPVSGEPLLLKNISTETAGYYI
CTSSNDVGIESCNITVAPRPPSMNIALYAGIAGSVFVALIIIGVIVYCCCCREKDDKDQDREDARPNRAA
YQVPKKEQKEISRGREDEDDHRHEDRWSSGRSTPDQPFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH