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Report for CCDS1546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1546.1 Public Homo sapiens 1 SRP9 24 110 108 CCDS HistoryNCBI Gene:6726Re-query CCDS DB by CCDS ID:1546.1Re-query CCDS DB by GeneID:6726See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1546.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304786.12 ENSP00000305230.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304786.12Link to Ensembl Protein Viewer:ENSP00000305230.7Re-query CCDS DB by Nucleotide ID:ENST00000304786Re-query CCDS DB by Protein ID:ENSP00000305230
Original member Current member NCBI NM_003133.6 NP_003124.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003133.6Link to Protein Sequence:NP_003124.1Re-query CCDS DB by Nucleotide ID:NM_003133Re-query CCDS DB by Protein ID:NP_003124Link to BLAST:NP_003124.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003124.1 86 P49458-1 86 100% 0 0

Chromosomal Locations for CCDS 1546.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 225777941 225778012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225783300 225783368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225789240 225789359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (261 nt):
ATGCCGCAGTACCAGACCTGGGAGGAGTTCAGCCGCGCTGCCGAGAAGCTTTACCTCGCTGACCCTATGA
AGGCACGTGTGGTTCTCAAATATAGGCATTCTGATGGGAACTTGTGTGTTAAAGTAACAGATGATTTAGT
TTGTTTGGTGTATAAAACAGACCAAGCTCAAGATGTAAAGAAGATTGAGAAATTCCACAGTCAACTAATG
CGACTTATGGTAGCCAAGGAAGCCCGCAATGTTACCATGGAAACTGAGTGA

Translation (86 aa):
MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFHSQLM
RLMVAKEARNVTMETE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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