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Report for CCDS155.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
155.1 Public Homo sapiens 1 EFHD2 24 110 108 CCDS HistoryNCBI Gene:79180Re-query CCDS DB by CCDS ID:155.1Re-query CCDS DB by GeneID:79180See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 155.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375980.9 ENSP00000365147.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375980.9Link to Ensembl Protein Viewer:ENSP00000365147.4Re-query CCDS DB by Nucleotide ID:ENST00000375980Re-query CCDS DB by Protein ID:ENSP00000365147
Original member Current member NCBI NM_024329.6 NP_077305.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024329.6Link to Protein Sequence:NP_077305.2Re-query CCDS DB by Nucleotide ID:NM_024329Re-query CCDS DB by Protein ID:NP_077305Link to BLAST:NP_077305.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077305.2 240 Q96C19 240 100% 0 0

Chromosomal Locations for CCDS 155.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 15409972 15410279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15425871 15426018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15427150 15427284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15428593 15428724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGGCCACGGACGAGCTGGCCACCAAGCTGAGCCGGCGGCTGCAGATGGAGGGCGAGGGCGGCGGCGAGA
CCCCGGAGCAGCCCGGGCTGAACGGGGCAGCGGCGGCGGCGGCGGGGGCACCCGACGAGGCGGCCGAGGC
GCTGGGCAGCGCGGACTGCGAGCTGAGCGCCAAGCTGCTGCGGCGCGCAGACCTCAACCAGGGCATCGGC
GAGCCCCAGTCGCCCAGCCGCCGCGTCTTCAACCCCTACACCGAGTTCAAGGAGTTCTCCAGGAAGCAGA
TCAAGGACATGGAGAAGATGTTCAAGCAGTATGATGCCGGGCGGGACGGCTTCATCGACCTGATGGAGCT
AAAACTCATGATGGAGAAACTTGGGGCCCCTCAGACCCACCTGGGCCTGAAAAACATGATCAAGGAGGTG
GATGAGGACTTTGACAGCAAGCTGAGCTTCCGGGAGTTCCTCCTGATCTTCCGCAAGGCGGCGGCCGGGG
AGCTTCAGGAGGACAGCGGGCTGTGCGTGCTGGCCCGCCTCTCTGAGATCGACGTCTCCAGTGAGGGTGT
CAAGGGGGCCAAGAGCTTCTTTGAGGCCAAGGTCCAGGCCATCAACGTGTCCAGCCGCTTCGAGGAGGAG
ATCAAGGCAGAGCAGGAGGAAAGGAAGAAGCAGGCGGAGGAGATGAAGCAGCGGAAAGCGGCCTTCAAGG
AGCTGCAGTCCACCTTTAAGTAG

Translation (240 aa):
MATDELATKLSRRLQMEGEGGGETPEQPGLNGAAAAAAGAPDEAAEALGSADCELSAKLLRRADLNQGIG
EPQSPSRRVFNPYTEFKEFSRKQIKDMEKMFKQYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEV
DEDFDSKLSFREFLLIFRKAAAGELQEDSGLCVLARLSEIDVSSEGVKGAKSFFEAKVQAINVSSRFEEE
IKAEQEERKKQAEEMKQRKAAFKELQSTFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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