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Report for CCDS15662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15662.1 Public Mus musculus 2 Mcm10 23 108 98 CCDS HistoryNCBI Gene:70024Re-query CCDS DB by CCDS ID:15662.1Re-query CCDS DB by GeneID:70024See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15662.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027980.7 ENSMUSP00000027980.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027980.7Link to Ensembl Protein Viewer:ENSMUSP00000027980.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027980Re-query CCDS DB by Protein ID:ENSMUSP00000027980
Original member Current member EBI ENSMUST00000102985.7 ENSMUSP00000100050.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102985.7Link to Ensembl Protein Viewer:ENSMUSP00000100050.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102985Re-query CCDS DB by Protein ID:ENSMUSP00000100050
Original member Current member NCBI NM_001305259.1 NP_001292188.1 Accepted alive Link to Nucleotide Sequence:NM_001305259.1Link to Protein Sequence:NP_001292188.1Re-query CCDS DB by Nucleotide ID:NM_001305259Re-query CCDS DB by Protein ID:NP_001292188Link to BLAST:NP_001292188.1
Original member Current member NCBI NM_027290.3 NP_081566.2 Accepted alive Link to Nucleotide Sequence:NM_027290.3Link to Protein Sequence:NP_081566.2Re-query CCDS DB by Nucleotide ID:NM_027290Re-query CCDS DB by Protein ID:NP_081566Link to BLAST:NP_081566.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292188.1 885 Q0VBD2 885 100% 0 0
NP_081566.2 885 Q0VBD2 885 100% 0 0

Chromosomal Locations for CCDS 15662.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 4991393 4991476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4992095 4992137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4992878 4993023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4993743 4993856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4994570 4994682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4995721 4995865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4997104 4997332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4998534 4998642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4998730 4998840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4999680 4999780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5000860 5001056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5001264 5001380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5004008 5004175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5004946 5005111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5006344 5006578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5007067 5007201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5007328 5007432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5008480 5008812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5010689 5010695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2658 nt):
ATGGATGTGGAGGAAGACGACTTGTGTCTCCTGACATCTCTACTGGAAGAGAATGAGGCAGTCTTACCTT
GCAGCTCAGAAAAGGATAAGTCCTTGTCTCTGGGAGACGGGGACCCTGATGAATTTGATGAGCTCTTTGA
TGCTGATGGTGATGGTGAGTCTTACACAGAAGAGGCTGGCAGTGGAGAAGAGGGCAAGACTGGAAACCAG
GAGGAACGTTTGGCCACTCTCTTTGGTGATGTGGAGGACTTAACGGATGATGAAGTTGCTACATCGAAAG
TTGGAAACAGTGGCCCCCCTCCTGCTCCCAGCCAAGAGAAAACCAGCGAGGAGCTGCAAGATGAATTAAA
GAAGTTGCAAGAGCAAATGAAATCCTTACAGGAGCAGCTAAAAGCTGCATCAATTAAACAGCCTCCAGGG
ACAGCACCCTTGCAGGAACCACCTGATTCATCTCTGCAGCCACTGCTTAAGGAGAAGAGAATTCGGAGAA
TTCAGGAGTCAGCGTGCTTTTCTGCAGAGCTTGATGTCCCCACTTTACCCAAAGCCAAGCGGGTTGCTCG
GAAGCCAAAGACTCCTGCAGAGTCATCTTCAAGGATGCGTACACCCGCACAGCCACTACAGGTTTCTTCC
AGTTTTCTAGAGCCTAACCACTCCTCTTCTTCGAGATCAAGCACACCCTCACCTCAAGCTGTTCCTGGAA
ACAAATGTAGCAGGACAATTAGAAATCAAAACACAGTGTCCCCAGGGAATTCTGGGGACCGGCCCCAGCA
GGTTTCCCAGGTCTCTGTGGAAGCCTTCTCAGGCCTACGCCTCAGGCGACCTCGAGTCTCCTCCACAGAA
ATGAGCAGGAAGATGGCAGGCCGGAAACTAATCAGACTGCCTCAGATCAAGGAGAAGATGGCAACTGAGA
ACCTGGAAGAGACAGACTGGGTGACGTTTGGGGTTATCCTCAGGAAGGTCACTCCACAGAGTGCTACCAG
TGGGCAAACGTTTAGCATCTGGAAACTGAACGACCTTCATGACCTGACTCAGTGTGTGTCCTTGTTCTTG
TTTGGAGATGTTCACAAAGATCTCTGGAAGACAGAGCAAGGGACCGTCATAGGCTTGCTCAACGCAAACC
CCATGAAGCCCAAAGATGGCTTGAAAGAGGTGTGCTTATCTATTGATCATCCTCAAAAAGTCTTAATTAT
GGGAGAAGCTATGGACCTGGGAGCCTGTAAAGCCAAGAAGAAGAATGGAGAGCCATGTACACAGACAGTT
AACTTGCATGACTGTGAATACTGCCAGTATCACATCCAGGCCCAGTACAAGAAGCTCAGCGCAAAGAGGA
CTGATCTGCAGTCCACTTTCTCTGGGGGACGGATTCCGAAGAAGTTCCGCAAAGGCACCAGCCTGAAGGA
GCGGCTGTGCCAAGATGGTTTCTACTATGGTGGTGTTTCTTCCGAATCCTTCGCAGCGTCCAGGGCGGCG
GCCATTGCTCCTAAGAAGAAGGTTCAAACCACGCTGACCAATCTGGTTGTCCGGGGCACAAACTCGATCA
TCCAGGAAACAAAACAAAAGCTTGGTATTCCCCAGAAGAGCTTGTCCTGCTCTGAGGAGTTCAGGGAATT
GATGGCCCTGCCCACATTTGGAGCCAGAAACTTACAAAAGCATCTAGCCAGAGCCAAGGCTTCAGGGAGT
TCCAAACCTGCCATCCAGTCCATCTCAGCATCAGCCCTCTTGAAGCAGCAGAAACAACAGATGCTGGAGA
TGCGGAAGAGGAGATCAGAAGACATACAGAAGCGATTCCTCCAAAGCTCAAGTGAAGTCCAGAGCCCAGC
AGTGCCGTCTTCCTCTCGACAGGCTGCTGCCCAGTCTCCTCGAACTGGGGCTGAGTTCCCCAGGTTGGAA
GGAACTGCAACCCCACGGATGCCCAAGCTGGGCAGAGGCATCTCAGAAGGGGACGATGTTCTCTTCTTTG
ATGATTCACCACCACCAAGACCAAAACTGAGCGCAGCAGCAGAAGCTAAAAAGTTAGCTGCTATTGCAAA
ATTAAGGGCAAAAGGCCAGATTCTCACAAAAGTAGATCCAAACAATACTGTAAGGAAGCAAATGGATGGC
CGAGCCATGCTGGGAGTGAAGGAGCGTGTGGAGAATAGCAACACAGTTTCTCCTGAAGAGGAGCTGGAGC
CTGCCAGGAAAAAAAGGAGAGAGCAGCTTGCCTACTTAGAGTCCGAGGAATTTCAGAAGATTCTAAAAGC
AAAGTCCAAGCACACAGACATCCTGAAAGAGGCTGAGGCTGAGCTACAGAAATCCTATTTTGAGCCACTG
GTGAAAAAAGAACAGATGGAAGAAAAGATGAGAGCCACCCGGGAAGTGAAATGCCGCGTGGTGACGTGCA
GGACGTGCACCTATACCCACTTCAAGCCTCTGGAGACCTGTGTCAGCGAGCAGCATAACCTCCACTGGCA
CGACGGCGTGAAGAGGTTTTTCAAATGTCCCTGTGGAAACAGGACCATCTCCCTGGACAAGCTCCCAAAC
AAGCACTGCCGTAACTGTGGCCTCTACAAGTGGGAACGGGATGGAATGCTGAAGGAGAAGACAGGTCCAA
AGATAGGAGGAGAGACCCTGCTGCCGAGAGGGGAAGAGCACGCCAAGTTTCTGAACAGCCTCAAGTGA

Translation (885 aa):
MDVEEDDLCLLTSLLEENEAVLPCSSEKDKSLSLGDGDPDEFDELFDADGDGESYTEEAGSGEEGKTGNQ
EERLATLFGDVEDLTDDEVATSKVGNSGPPPAPSQEKTSEELQDELKKLQEQMKSLQEQLKAASIKQPPG
TAPLQEPPDSSLQPLLKEKRIRRIQESACFSAELDVPTLPKAKRVARKPKTPAESSSRMRTPAQPLQVSS
SFLEPNHSSSSRSSTPSPQAVPGNKCSRTIRNQNTVSPGNSGDRPQQVSQVSVEAFSGLRLRRPRVSSTE
MSRKMAGRKLIRLPQIKEKMATENLEETDWVTFGVILRKVTPQSATSGQTFSIWKLNDLHDLTQCVSLFL
FGDVHKDLWKTEQGTVIGLLNANPMKPKDGLKEVCLSIDHPQKVLIMGEAMDLGACKAKKKNGEPCTQTV
NLHDCEYCQYHIQAQYKKLSAKRTDLQSTFSGGRIPKKFRKGTSLKERLCQDGFYYGGVSSESFAASRAA
AIAPKKKVQTTLTNLVVRGTNSIIQETKQKLGIPQKSLSCSEEFRELMALPTFGARNLQKHLARAKASGS
SKPAIQSISASALLKQQKQQMLEMRKRRSEDIQKRFLQSSSEVQSPAVPSSSRQAAAQSPRTGAEFPRLE
GTATPRMPKLGRGISEGDDVLFFDDSPPPRPKLSAAAEAKKLAAIAKLRAKGQILTKVDPNNTVRKQMDG
RAMLGVKERVENSNTVSPEEELEPARKKRREQLAYLESEEFQKILKAKSKHTDILKEAEAELQKSYFEPL
VKKEQMEEKMRATREVKCRVVTCRTCTYTHFKPLETCVSEQHNLHWHDGVKRFFKCPCGNRTISLDKLPN
KHCRNCGLYKWERDGMLKEKTGPKIGGETLLPRGEEHAKFLNSLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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