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Report for CCDS15678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15678.1 Public Mus musculus 2 Itih5 23 108 98 CCDS HistoryNCBI Gene:209378Re-query CCDS DB by CCDS ID:15678.1Re-query CCDS DB by GeneID:209378See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026886.7 ENSMUSP00000026886.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026886.7Link to Ensembl Protein Viewer:ENSMUSP00000026886.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026886Re-query CCDS DB by Protein ID:ENSMUSP00000026886
Original member Current member NCBI NM_172471.2 NP_766059.1 Accepted alive Link to Nucleotide Sequence:NM_172471.2Link to Protein Sequence:NP_766059.1Re-query CCDS DB by Nucleotide ID:NM_172471Re-query CCDS DB by Protein ID:NP_766059Link to BLAST:NP_766059.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766059.1 952 Q8BJD1 952 100% 0 0

Chromosomal Locations for CCDS 15678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 10153666 10153755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10164684 10164728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10185519 10185682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10186955 10187056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10190200 10190450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10205771 10205940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10206773 10206889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10235003 10235171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10238562 10238871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10240520 10241079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10242501 10242554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10245524 10245640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10249089 10249466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10251252 10251583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2859 nt):
ATGCTCCTGCTGCTAGGGCTGTGCTTGGGGTTGCCCCTCTTCTCAGAGTCCCAGGAAGAGGCAAGGAGTT
GGGACGACACCTCGGAGCAAGTCGTGCTCAGGGTCCCCAGGCAGCTCAGGCTGTTGCAAAGACTGAAAAC
CAAGCCCTTGATGGCAGAGTTTTCGGTGAAGTCTACCATCATTTCCCGCTATGCCTTCACCACGGTGTCC
TGCAGGATGCTCAACAGAGCTTCTGAAGACCAGGAGGCTGAGTTCCAGATGCAGATTCCAGAATCAGCTT
TCATCACCAACTTCACCATGCTTATAGGAGACAGCGTGTATCGGGGTGAAATTACACAGAAAGATAAGAA
AAGCAGTGAGAGCGTAAAAGATAAAAGGAACAGAACCTCAGACGATAATGAAGAAAACGGGAGTGACATG
TTCAAAGCGTCTTTAGTGATTCCCAGCAAGGACAAAGCTGCTTTCTTCCTCAGTTATGAAGAGCTTCTGC
AGAGGAGGCTGGGGAAATACGAGCATAGCATCAGCGTGCGCCCCCAGCAGCTGGTGGGGAGGCTGACTGT
GGAGGTGGACATCCTGGAGCGATCGGGCATCACATCCTTGGAAGTGCTGCCTCTCCACAACAGCAGGAAG
AAGGGTAGTGGGAAGGCAGAAGGTGATGTGGGTCCTCCCCCTTCTACTCTCATCAACCAAAATGAGACAT
TTGCCAAAGTCATCTTTAAGCCTACTGTGGTCCAACAAGCTAAGATTGCCCAGAATGGGATCTTGGGAGA
TTTCATCGTTCGGTATGATGTCGAGAGAGAGCAGAACATTGGTGACATCCAGGTTCTGAATGGTTATTTC
GTGCACTACTTTGCTCCTAAAAACCTCCCTCCTCTACCCAAGAACGTGGTCTTCGTGCTTGACATCAGCG
CTTCCATGGTGGGAGCGAAACTCCAGCAGACCAGGGAGGCTCTCGTCACAATTCTCAATGACCTCCGACC
CCAGGATCGCTTCAATATCATTGGGTTCTCCAATCGGATTAAAATGTGGAAGGACCACTTACTACCAGTG
ACTCCTGACAACATTAGGAATGGCAAGATCTACATGTACCATCTGTCACCCACTGGAGGCACAGACATCA
ATGGGGCCCTTCAGGCTGCCATCAAACTGCTCAACAACTACGTGGCCCAGAATGACATTGAAGACCGAAG
TGTGTCCCTCATCATCTTCCTCACCGATGGGAAACCCACCTTTGGGGAGACCAATACCCTCAAGATTCTC
AGCAACACCAAGGAAGCCACCAGAGGTCAGATCTGCATCTTCACCGTTGGCATTGGCGATGACGTGGACT
TCAAACTGTTAGAGAAACTCTCGCTGGAGAACTGCGGTCTCACGAGGCGTGTTCATGAGGAGGACAAGGC
GGGCGCACAGCTCATCGGGTTCTATGATGAGATCCGGACCCCGCTTCTTTCTGACATCCGCATAGATTAT
CCTCCTGACGTAGTAGAGCATGCCACCAAGACCCTGTTCCCTAACTACTTCAATGGCTCTGAGATAGTGA
TTGCAGGGAAGATGGTGGACAAGAAGTTTGATCAACTGCATGTGGAGGTCACTGCCAGCAACAGTAAGAA
ATTTGTCATCCTAAAAAGAGACATCCCCGTGGAGTTCCGGAAGATGGGGAATGATGTCTCAGTCACACCT
GGCTCAGCCAGAGATGGCGGGAAGGACCTAAACCACATTGAGCGACTTTGGAGCTACCTCACTGTGAAGG
AGCTGCTAAGCTCCTGGAGGCAGAGCAACAGTGAGCAAGAGAAAGAGCAGCTGAGGCAGAAGGCCCAGGA
CTTAGCCTTGAACTATCATTTCCTCACCCCCTTCACCTCCATGAAGCTGAGGAAGCCAGGGCTCCGCACA
AACCAGCTGGAGGACACCTATGGCATGTCTGCAGCTACAGGACCTGCGACCGTGGTGCAGAACCTTCGAG
AGGCCGGCAAGCAGCCAGAACCTGATCTCAAAAAAACATATGACCCAAGAATTAAAATCTCTAAAACATC
AGTGGATGGTGATCCTCATTTTGTAGTGGATTTCCCCCTAAGCAAACTCACTGTCTGCTTTAACATCGAC
GGAGAGCCGGGGGACATCCTACGTCTGGTCTCTGATCATCTGAACTCTGGTGTGACTGTGAATGGCGAGC
TTATTGGGGCCCCCGCACCTCCGAATGGTCACAAGAAACAGCGCACCTACTTCCGCACCATCACCATCCT
CATCAACCGGCCAGAGAGATCTTACCTGGAGATCACACCAAGCAGGGTCATCCTGGACGGTGGGGACAGG
CTGGTACTCCCCTGCAACCAGAGCGTGGTAGTAGGGAGTCGAGGATTGGAGGTGTCAGTGTCTGCCAATG
CCAACATCACCGTGGTCATCCAGGGCAACATTGCCTTTGTCATCCTCATCCACCTGTACAAAAACCCAGC
ACCCTTCCAGAGAGACCACCTGGGCTTCTACATCGCCAACAGCAGAGGTCTCTCCGACAACTGCCACGGA
CTGCTAGGTCAGTTCCTGAACCAGGATGCCAAACTTGTAGGAGCTCCTGAGGAATACGGCAAGAATCTTA
GTAACCAGCCATTTCCTCGGGCAGAAGGGATGCCTGAGGCTATCCTGAAGGTGAAAGGGCGCCGAGTTCC
AGTGGTCTGGAAACAAAGGAAGATTTACAACGGGCAAGCACAGGTAGACTGCTGGTTTGACAGAAACAAT
GCTGCCAAGCTGATTGACGGTGTCTATAAGGACTACCTGGCATCTCATCCGTTTGACACAGAGAGTGCAC
TGGGCCTGAGCACGCCCAGGAAACCTGAGACCGACAGGCCCCATGAGGAGAGTGTCTAA

Translation (952 aa):
MLLLLGLCLGLPLFSESQEEARSWDDTSEQVVLRVPRQLRLLQRLKTKPLMAEFSVKSTIISRYAFTTVS
CRMLNRASEDQEAEFQMQIPESAFITNFTMLIGDSVYRGEITQKDKKSSESVKDKRNRTSDDNEENGSDM
FKASLVIPSKDKAAFFLSYEELLQRRLGKYEHSISVRPQQLVGRLTVEVDILERSGITSLEVLPLHNSRK
KGSGKAEGDVGPPPSTLINQNETFAKVIFKPTVVQQAKIAQNGILGDFIVRYDVEREQNIGDIQVLNGYF
VHYFAPKNLPPLPKNVVFVLDISASMVGAKLQQTREALVTILNDLRPQDRFNIIGFSNRIKMWKDHLLPV
TPDNIRNGKIYMYHLSPTGGTDINGALQAAIKLLNNYVAQNDIEDRSVSLIIFLTDGKPTFGETNTLKIL
SNTKEATRGQICIFTVGIGDDVDFKLLEKLSLENCGLTRRVHEEDKAGAQLIGFYDEIRTPLLSDIRIDY
PPDVVEHATKTLFPNYFNGSEIVIAGKMVDKKFDQLHVEVTASNSKKFVILKRDIPVEFRKMGNDVSVTP
GSARDGGKDLNHIERLWSYLTVKELLSSWRQSNSEQEKEQLRQKAQDLALNYHFLTPFTSMKLRKPGLRT
NQLEDTYGMSAATGPATVVQNLREAGKQPEPDLKKTYDPRIKISKTSVDGDPHFVVDFPLSKLTVCFNID
GEPGDILRLVSDHLNSGVTVNGELIGAPAPPNGHKKQRTYFRTITILINRPERSYLEITPSRVILDGGDR
LVLPCNQSVVVGSRGLEVSVSANANITVVIQGNIAFVILIHLYKNPAPFQRDHLGFYIANSRGLSDNCHG
LLGQFLNQDAKLVGAPEEYGKNLSNQPFPRAEGMPEAILKVKGRRVPVVWKQRKIYNGQAQVDCWFDRNN
AAKLIDGVYKDYLASHPFDTESALGLSTPRKPETDRPHEESV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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