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Report for CCDS1579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1579.1 Public Homo sapiens 1 NUP133 24 110 108 CCDS HistoryNCBI Gene:55746Re-query CCDS DB by CCDS ID:1579.1Re-query CCDS DB by GeneID:55746See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1579.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261396.6 ENSP00000261396.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261396.6Link to Ensembl Protein Viewer:ENSP00000261396.3Re-query CCDS DB by Nucleotide ID:ENST00000261396Re-query CCDS DB by Protein ID:ENSP00000261396
Original member Current member NCBI NM_018230.3 NP_060700.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018230.3Link to Protein Sequence:NP_060700.2Re-query CCDS DB by Nucleotide ID:NM_018230Re-query CCDS DB by Protein ID:NP_060700Link to BLAST:NP_060700.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060700.2 1156 Q8WUM0 1156 100% 0 0

Chromosomal Locations for CCDS 1579.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 229441904 229442040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229444914 229445002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229449126 229449190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229450525 229450605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229452525 229452643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229458161 229458296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229460611 229460769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229463543 229463676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229464624 229464875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229465420 229465519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229466634 229466756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229470580 229470804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229475638 229475732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229477597 229477760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229484054 229484145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229486371 229486528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229487466 229487613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229489955 229490102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229495495 229495565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229495892 229496047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229498136 229498306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229499684 229499818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229500756 229500863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229501999 229502102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229506040 229506158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229508068 229508249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3471 nt):
ATGTTCCCAGCCGCCCCTTCTCCGCGGACCCCGGGTACCGGGTCCCGAAGGGGCCCGCTGGCCGGACTCG
GGCCCGGCTCCACGCCCCGGACGGCTAGCAGGAAGGGTCTGCCCCTGGGGTCTGCAGTCAGCTCCCCAGT
GCTCTTCTCGCCGGTCGGCCGGCGTAGCTCGCTAAGCTCGCGGGGAACACCAACACGAATGTTCCCACAC
CACTCCATAACTGAGTCTGTGAACTATGATGTGAAAACGTTTGGATCTTCTCTTCCTGTTAAAGTCATGG
AAGCCCTAACATTGGCTGAAGTCGATGACCAGCTGACCATTAACATAGATGAAGGTGGATGGGCTTGTCT
GGTGTGCAAAGAGAAGCTCATTATTTGGAAGATTGCTCTGTCACCTATTACTAAGTTATCCGTTTGCAAA
GAACTTCAGCTGCCACCTAGTGATTTCCACTGGAGTGCCGACTTAGTGGCTCTTTCTTACTCTTCTCCCT
CAGGTGAAGCACATTCTACTCAGGCTGTTGCTGTCATGGTTGCCACCAGAGAAGGATCTATCCGCTATTG
GCCAAGCCTTGCTGGTGAAGATACCTACACAGAGGCTTTTGTAGATTCGGGAGGTGATAAGACTTACAGT
TTCCTAACAGCAGTGCAGGGAGGAAGTTTTATTTTGTCTTCATCAGGAAGCCAACTAATTCGGTTGATAC
CTGAGAGCTCAGGAAAGATTCATCAGCATATCCTGCCTCAGGGGCAAGGCATGCTTTCAGGAATTGGTCG
AAAAGTTTCTTCTCTTTTTGGAATTTTATCTCCTAGTAGTGATCTCACACTTTCAAGTGTTCTCTGGGAT
AGAGAGAGATCAAGCTTTTATAGCCTGACGAGTTCAAACATCAGTAAATGGGAATTAGATGATTCTTCAG
AAAAGCATGCATACAGTTGGGATATAAATAGAGCCCTGAAGGAAAACATTACCGATGCTATTTGGGGATC
TGAAAGTAACTATGAAGCTATTAAAGAAGGAGTCAACATTCGATATTTGGACTTGAAGCAAAACTGTGAT
GGGCTGGTGATTTTGGCAGCAGCATGGCACTCAGCAGACAATCCATGTCTCATCTATTACTCTCTGATAA
CAATAGAAGATAATGGTTGCCAAATGTCAGATGCAGTTACTGTAGAAGTCACTCAATATAATCCACCTTT
TCAGTCTGAAGACCTGATTTTGTGTCAGTTGACGGTCCCAAACTTTTCAAACCAGACTGCCTATCTGTAT
AACGAAAGTGCTGTCTATGTGTGCTCCACAGGAACTGGGAAATTTTCTCTTCCCCAGGAGAAAATTGTCT
TTAATGCACAAGGAGATAGTGTTTTAGGTGCTGGTGCCTGTGGTGGTGTTCCTATCATTTTTTCTAGAAA
CAGTGGACTGGTGTCTATTACTTCAAGGGAAAATGTGTCTATATTGGCAGAAGACTTGGAAGGGTCTTTA
GCATCTTCAGTTGCTGGACCAAACAGTGAGAGTATGATTTTTGAGACCACTACAAAGAATGAAACTATAG
CCCAGGAAGATAAAATCAAGTTGCTGAAAGCTGCCTTTCTGCAATACTGCAGAAAAGATTTAGGTCATGC
TCAAATGGTGGTTGATGAGCTCTTTTCCTCTCACTCTGATTTGGATTCTGATTCTGAACTAGACAGGGCA
GTTACCCAAATCAGTGTAGACCTGATGGATGACTACCCAGCATCTGACCCACGGTGGGCTGAGTCTGTCC
CTGAGGAAGCACCTGGGTTCAGCAATACGTCACTGATTATCCTTCACCAGCTAGAAGACAAGATGAAAGC
TCACTCTTTTCTTATGGACTTTATTCATCAAGTTGGCTTATTTGGACGTCTAGGCAGTTTTCCAGTTAGA
GGGACACCGATGGCCACTCGACTGTTGCTCTGTGAGCATGCCGAAAAGCTGTCAGCCGCCATTGTTCTCA
AGAACCACCACTCCCGGCTTTCTGACCTTGTCAACACAGCCATATTGATTGCTTTGAACAAGAGGGAGTA
TGAAATCCCATCCAACCTGACTCCTGCAGATGTCTTTTTCAGGGAGGTATCCCAAGTAGATACCATCTGT
GAGTGCTTACTGGAGCATGAGGAGCAAGTCTTGAGGGATGCACCTATGGATTCCATTGAATGGGCTGAAG
TGGTGATCAATGTGAACAATATTCTCAAGGATATGCTGCAGGCTGCTAGTCATTATCGCCAAAATAGAAA
CTCTTTGTATAGAAGAGAAGAATCACTAGAAAAAGAACCTGAATATGTTCCATGGACGGCAACAAGTGGT
CCTGGTGGCATCCGAACGGTAATAATACGCCAGCATGAGATTGTCCTGAAGGTGGCTTATCCACAGGCAG
ACAGCAACCTCCGAAACATCGTGACCGAGCAGCTGGTAGCCCTGATCGATTGCTTCCTGGATGGTTATGT
TTCTCAGCTTAAGTCTGTGGATAAATCCAGTAATCGGGAAAGATATGACAATCTGGAGATGGAATACCTA
CAGAAAAGATCAGATCTCTTATCTCCTCTTCTTTCACTAGGCCAGTACCTGTGGGCTGCTTCTCTAGCAG
AGAAATACTGTGACTTTGATATATTGGTACAAATGTGTGAGCAGACTGACAACCAGAGCCGACTCCAGCG
CTACATGACCCAGTTTGCTGATCAGAATTTTTCAGACTTTCTCTTCCGTTGGTATCTGGAGAAAGGAAAG
CGAGGCAAATTATTATCTCAGCCCATTTCTCAGCATGGACAGTTGGCAAATTTTTTGCAAGCTCATGAAC
ATCTCAGCTGGTTACATGAAATTAATAGCCAAGAATTAGAAAAGGCTCATGCAACACTTCTGGGTTTGGC
AAATATGGAAACTCGTTACTTTGCAAAGAAGAAAACCCTTCTTGGCTTGAGTAAATTGGCTGCATTAGCT
TCAGACTTTTCAGAGGATATGCTACAAGAAAAAATTGAAGAAATGGCTGAGCAGGAGCGCTTTCTACTGC
ATCAGGAGACCCTACCTGAACAGCTGCTGGCGGAGAAACAGCTAAATCTCAGTGCGATGCCAGTATTGAC
TGCACCACAACTCATTGGTCTATATATCTGTGAAGAAAATAGAAGAGCTAATGAATATGATTTCAAGAAA
GCTTTGGACTTGTTGGAATATATTGATGAGGAAGAAGATATAAATATAAATGATCTAAAACTGGAAATCC
TTTGCAAAGCTCTTCAGAGAGATAACTGGTCCAGTTCTGATGGCAAAGATGATCCAATTGAAGTATCTAA
AGACAGTATATTTGTGAAGATCTTACAGAAACTTTTAAAAGATGGCATTCAGCTCAGTGAGTACTTACCG
GAGGTGAAAGACCTGCTACAAGCGGATCAGCTTGGAAGCTTAAAGTCCAATCCTTACTTCGAGTTTGTTT
TGAAAGCAAATTATGAATATTATGTTCAGGGACAAATATAA

Translation (1156 aa):
MFPAAPSPRTPGTGSRRGPLAGLGPGSTPRTASRKGLPLGSAVSSPVLFSPVGRRSSLSSRGTPTRMFPH
HSITESVNYDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWACLVCKEKLIIWKIALSPITKLSVCK
ELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATREGSIRYWPSLAGEDTYTEAFVDSGGDKTYS
FLTAVQGGSFILSSSGSQLIRLIPESSGKIHQHILPQGQGMLSGIGRKVSSLFGILSPSSDLTLSSVLWD
RERSSFYSLTSSNISKWELDDSSEKHAYSWDINRALKENITDAIWGSESNYEAIKEGVNIRYLDLKQNCD
GLVILAAAWHSADNPCLIYYSLITIEDNGCQMSDAVTVEVTQYNPPFQSEDLILCQLTVPNFSNQTAYLY
NESAVYVCSTGTGKFSLPQEKIVFNAQGDSVLGAGACGGVPIIFSRNSGLVSITSRENVSILAEDLEGSL
ASSVAGPNSESMIFETTTKNETIAQEDKIKLLKAAFLQYCRKDLGHAQMVVDELFSSHSDLDSDSELDRA
VTQISVDLMDDYPASDPRWAESVPEEAPGFSNTSLIILHQLEDKMKAHSFLMDFIHQVGLFGRLGSFPVR
GTPMATRLLLCEHAEKLSAAIVLKNHHSRLSDLVNTAILIALNKREYEIPSNLTPADVFFREVSQVDTIC
ECLLEHEEQVLRDAPMDSIEWAEVVINVNNILKDMLQAASHYRQNRNSLYRREESLEKEPEYVPWTATSG
PGGIRTVIIRQHEIVLKVAYPQADSNLRNIVTEQLVALIDCFLDGYVSQLKSVDKSSNRERYDNLEMEYL
QKRSDLLSPLLSLGQYLWAASLAEKYCDFDILVQMCEQTDNQSRLQRYMTQFADQNFSDFLFRWYLEKGK
RGKLLSQPISQHGQLANFLQAHEHLSWLHEINSQELEKAHATLLGLANMETRYFAKKKTLLGLSKLAALA
SDFSEDMLQEKIEEMAEQERFLLHQETLPEQLLAEKQLNLSAMPVLTAPQLIGLYICEENRRANEYDFKK
ALDLLEYIDEEEDININDLKLEILCKALQRDNWSSSDGKDDPIEVSKDSIFVKILQKLLKDGIQLSEYLP
EVKDLLQADQLGSLKSNPYFEFVLKANYEYYVQGQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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