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Report for CCDS15899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15899.1 Public Mus musculus 2 Fubp3 23 108 98 CCDS HistoryNCBI Gene:320267Re-query CCDS DB by CCDS ID:15899.1Re-query CCDS DB by GeneID:320267See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15899.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055244.12 ENSMUSP00000053474.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055244.12Link to Ensembl Protein Viewer:ENSMUSP00000053474.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055244Re-query CCDS DB by Protein ID:ENSMUSP00000053474
Original member Current member NCBI NM_001033389.4 NP_001028561.2 Accepted alive Link to Nucleotide Sequence:NM_001033389.4Link to Protein Sequence:NP_001028561.2Re-query CCDS DB by Nucleotide ID:NM_001033389Re-query CCDS DB by Protein ID:NP_001028561Link to BLAST:NP_001028561.2

Chromosomal Locations for CCDS 15899.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 31572870 31572953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31583155 31583260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31592463 31592496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31594843 31594892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31595250 31595321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31596594 31596651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31598538 31598700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31600453 31600551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31603211 31603315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31604614 31604716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31605243 31605343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31608085 31608226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31611579 31611739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31612485 31612558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31612837 31612908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31613031 31613107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31614711 31614782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31615498 31615652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGGCGGAGCTGGTGCAGGGGCAGAGCGCTCCGGTGGGCATGAAGGCTGAGGGCTTTGTGGATGCCCTGC
ACCGGGTCCGGCAGATTGCTGCTAAAATCGATTCAATTCCTCACTTGAATAATTCCACACCTCTGGTGGA
CCCCTCAGTGTACGGATACGGAGTACAGAAGCGGGCCCTGGATGATGGAGTAGGTAACCAGTTAGGGGCC
TTGGTACATCAAAGGGCAGTAATAACAGAAGAATTCAAAGTGCCTGATAAAATGGTTGGATTTATTATTG
GCAGGGGAGGTGAGCAGATTTCACGAATTCAAGCAGAATCTGGGTGCAAAATTCAGATTGCCTCAGAGAG
TTCTGGGATTCCAGAGAGGCCCTGTGTACTTACCGGAACCCCAGAAAGTATTGAACAAGCCAAACGGCTC
CTGGGGCAGATCGTGGATCGATGTCGGAATGGGCCTGGCTTTCACAACGATATGGATGGCAACAGCACAA
TCCAGGAACTTCTTATCCCTGCATCTAAAGTGGGGCTGGTCATCGGCAAAGGAGGGGAAACGATCAAGCA
GTTGCAGGAGCGAACGGGTGTGAAAATGGTCATGATCCAGGATGGCCCGCTGCCTACAGGAGCAGACAAG
CCTCTCCGCATCACTGGAGACCCATTTAAAGTACAGCAAGCAAGAGAAATGGTTCTAGAGATTATCCGAG
AGAAAGATCAGGCTGACTTCCGGGGTGTGCGCAGCGATTTCACCTCCCGAGCAGGCGGAGGTAGTATAGA
GGTGTCTGTGCCTAGGTTTGTTGTTGGGATTGTCATAGGAAGGAACGGAGAAATGATTAAGAAGATCCAG
AACGACGCTGGTGTGAGGATCCAATTCAAACCAGATGACGGGATTAGTCCAGAAAGAGCAGCGCAGGTCA
TGGGCCCTCCAGATCGGTGTCAGCATGCAGCTCGCATCATCAATGAGCTCATTCTCACGGCACAGGAAAG
AGAGATCCTTGGTGGCCTCACAGTAACAAGAGGAAGAGGCCGAGGCCGTAGTGACTGGAGTGTGGGCACT
CCTGGGGGCGTCCAGGAAATTACGTACACAGTGCCAGCTGATAAGTGCGGCCTTGTGATAGGCAAAGGGG
GCGAGAACATCAAAAGCATCAACCAGCAATCAGGTGCCCATGTGGAGCTTCAGCGGAACCCCCCTCCTAA
CACCGACCCTAACCTGCGGATATTTACCATCAGGGGTGCTCCTCAGCAGATGGAGGTGGCCAGGCATCTC
ATAGATGAGAAAGTTGGCGGTGCCAGCCTCGGAGCCCCTGCAGCCTTCGGACAGAGCCCCTTCAGCCAGC
CACCAGCCGCACCACATCAAAACACCTTTCCTCCCAGGGGCTTCCCCAACATCGCAGCTAAAGTTAATGG
GAATCCCCACAGCACCCCTGTGAGTGGCCCTCCAGCTTTTCTGACCCAAGGCTGGGGCAGCACTTACCAG
GCTTGGCAGCAGCCTACACAACAAGTCCCAAGCCAGCAGAGTCAGCCACAGAACAGCCAGCCCGACTACA
GCAAGGCCTGGGAGGACTATTACAAAAAGCAGAGTCATCCCACCAGTGCTGCCCCACAGGCCAGCTCCCC
CCCAGACTACACGATGGCCTGGGCTGAGTACTACAGGCAGCAGGCCGCCTTCTATGGGCAGACTTTAGGG
CAGGCTCAGGCCCACAGCCAGGTCTGTAGCCAGTCCCCAGCGCCATGA

Translation (575 aa):
MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKIDSIPHLNNSTPLVDPSVYGYGVQKRALDDGVGNQLGA
LVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRL
LGQIVDRCRNGPGFHNDMDGNSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADK
PLRITGDPFKVQQAREMVLEIIREKDQADFRGVRSDFTSRAGGGSIEVSVPRFVVGIVIGRNGEMIKKIQ
NDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAARIINELILTAQEREILGGLTVTRGRGRGRSDWSVGT
PGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQMEVARHL
IDEKVGGASLGAPAAFGQSPFSQPPAAPHQNTFPPRGFPNIAAKVNGNPHSTPVSGPPAFLTQGWGSTYQ
AWQQPTQQVPSQQSQPQNSQPDYSKAWEDYYKKQSHPTSAAPQASSPPDYTMAWAEYYRQQAAFYGQTLG
QAQAHSQVCSQSPAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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