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Report for CCDS16170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16170.1 Public Mus musculus 2 Itprid2 23 108 98 CCDS HistoryNCBI Gene:70599Re-query CCDS DB by CCDS ID:16170.1Re-query CCDS DB by GeneID:70599See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16170.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111785.8 ENSMUSP00000107415.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111785.8Link to Ensembl Protein Viewer:ENSMUSP00000107415.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111785Re-query CCDS DB by Protein ID:ENSMUSP00000107415
Original member Current member NCBI NM_080558.4 NP_542125.3 Accepted alive Link to Nucleotide Sequence:NM_080558.4Link to Protein Sequence:NP_542125.3Re-query CCDS DB by Nucleotide ID:NM_080558Re-query CCDS DB by Protein ID:NP_542125Link to BLAST:NP_542125.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542125.3 1252 Q922B9-1 1252 100% 0 0

Chromosomal Locations for CCDS 16170.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 79635540 79635744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79636033 79636078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79639257 79639306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79640146 79640202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79641962 79642001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79642091 79642189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79643404 79643612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79644405 79645108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79651388 79651460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79655087 79655175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79657147 79658349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79660233 79660310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79660393 79660520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79660854 79661004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79661639 79661704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79662309 79662764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79670730 79670834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3759 nt):
ATGAACCGACCCCTGTCGGCGGAGGCGGAGGAGGAACTGGAGTGGCAAGTGGCGAGTCGCAGGAGGAAGG
CCTGGGCCAAGTGCCGCAGCTCCTGGCAGGCGTCGGAGACCGAGGATCTGTCCACAGAGACGACGACGCA
GGACGAGGACGAGGACGACGAGGAGGACCTCCCAGGCACGAAGCTGCCGGCACCCGCGGGGCGAGGAAAC
GTGCCCAACGAGAAGATCGCGATATGGCTCAAAGACTGCCGCACCCCTCTGGGAGCCTCACTGGATGAGC
AAAGCAGTGGTACGCCGAAGGGTGTGCTTGTGAGAAATGGAGGAAGCTTTGAAGATGACCTGTCACTGGG
AGCTGAAGCCAATCACCTACATGAACCTGATGCTCAAGTTGAAAACTGCAACAATATCTTGGCCAAGGAG
AGAAGACTACAGTTTCATCAGAAAGGGAGAAGTATGAATTCCACTGGGTCTGGGAAAAGCAGTGGTACCG
TGTCAAGTGTCTCAGAACTGCTGGAGCTTTACGAGGAAGATCCTGAAGAAATTCTATATAATCTTGGATT
TGGACGAGATGAACCAGATATTGCTTCTAAAATTCCTTCCAGATTTTTTAATTCATCATCCTTTGCCAGA
GGCATAGACATTAAAGTATTTCTGAGTGCACAGATGCAACGGATGGAAGTAGAGAACCCAAACTATGCTC
TGACAAGCCGATTTCGCCAAATTGAAGTCCTGACTACTGTGGCCAATGCATTTTCTTCTCTATATTCCCA
AGTCTCTGGAACTCCACTGCAGAGGATTGGAAGTATGTCCTCGGTGACCTCCACCAAGGAGGTGGCAGAC
TCCCCGCCCCCTCTAACTCGAAGCAACACTGCAAACCGTCTGATGAAAACACTATCAAAACTGAACTTAT
GTGTTGATAAAACAGAGAAAGGAGAAGGGGGCTCTTCCCCCGCCACTGAGAAAGGAAGGACTCTAAGCAT
CTCACTGTCTGAAGATGGCGGCGGCGGCAAGAGTGACCCTAAGCTTCAGAAAGTTGTAAAGAAGAAGGAG
TCGTCTTCGATGCTGGCTACGGTTACAGAAGAAGTCTCAGGTAGTTCATCAACCGTCACAGACAGCGTTG
ATGCAGACAGACTTTCCGAGGAAGCAGACAGTACCATTAGCCACCAGGAGGAAAGTGAAGAAAGCAGAGA
GGCTCACAGTCAGGAGAAGGACCCGCTCCGCAAGTCTGCTGTGACAGATCCTGACTTGGGTCATGATGGC
CGCGTGTCCAGCCACTGCGAGCTGGAGAGCAGCAGTGAGCTGAAAAGTGCCCAGGCGTCTTCGAGCGAGA
AAGAGCCTTGTGCACCCCTGACAATCCCATCCATACGGAACATAATGACGCAGCAGAAAGACTCCTTTGA
GATGGAAGAGGTCCAGAGCACAGAGGGAGAAGCCCCTCACGTGCCAGCCACTTGCCAGCTAAGTCTTGCC
AAGTCAAAAAGAGATCATCTGTTGAGAACTGCAAGTCAGCATTCCGATAGCAGCGGCTTTGCTGAGGACT
CCACAGACTGTGTCTCCCTCAACCACCTCCTGGTGAACGAGTCCCTGCAAGCCATGGGGAGCAGTGCTGA
CAGCTGTGACAGTGAAACCACCGTCACATCGCTTGGTGAGGACCACGTGACTCCTACAGCGCAAGACCAG
CCTTACTTCAATGAGTCAGAGGAGGAGTCCCTGGCTCCTCTGCAGAAAGGAAGAGCAAAGGTGGAAATAG
TGGCTGAGAAAAGGAAAGCCGACAACCAAGATTTCCCTCAGTGTGTGACCGCAGAGAATGCTGGAAACAA
TGAGTCCACAAAGGGCCCGTGTGAGCCTGGTCATCAGATCACAGAAACAGGGGAGCATCCACCTCTGGCA
GCCACTGGAGAGCTCCCCAGGGAAGAGAGTGTCGAGAGTGATGTAGAGAAAGGCAGTGAATGTGAATTTG
CCCAGTACACCACACACCATATTCTCAGATCCTTGGCTTCCTTTGAAGCGCAGGGCAGCGGTATGAGCTC
TGAAAAGAAAACTGGGTTTCCCTCTTCTGTGGACAGAGTGAACACTGCCCTGCAGAGAGCTCAAATGAAG
GTCTGCAGTATGTCTGGGCAGAGAGTAGGGCGTAGCCTAATAAAATCAAAGGATCTGTTGAAACAAAGGT
ACTTGCTCGCAAAAGCTGGCTATCCTCTGAGAAGGTCTCAGTCTTTGCCCACCACTTTACTGAGCCCAGT
ACGGGTGGTGTCTTCTGTCAATGTGCGATTATCTCCAGGAAAAGAGACCAGGTGCAGCCCACCGTCCTTC
ACCTACAAGTACACACCCGAAGAGGAACAAGACCTGGAAAAGCAAGGAACTGAACACGATGGTCAGTCTC
TGGTTAAATCTACCATCTTCATCCCGCCACCCTCTGTGAAGAAAGAAGAAGCCCCTCAGAGTGAGGGGAC
ACGACTGGAGGAATGCCACCATGGAAGGCTTGCCCCCTGCCCACAGTTCGCTCCAATATCCCAGTCCACC
TGCTCCCTTCACTCTGTCCACTCTGAGTGGCAGGACAGACCCCTGTGTGAACACATGAGGACTCTGAGTG
CCCACAGTGTCCCCAACATATCGGGTGCCGCATGTAGTGCCTTCTCTCCTTTCGGGTGTCCCTATTCACA
CAGACATGCTGCCCACCCATACAGGGCATGCTCTGTGAATCCTCCTTCTGCCATTGAGATGCAGTTGCGG
AGAGTGTTGCATGATATTAGAAGCTCACTACAGAATCTTTCACAGTATCCTATGACGAGAGGACCTGACC
TTGCTGCTGCTCCATACAGTACTCAGAACTCGTCTGTCCTACCTCTTTATGAAAATACCTTCCAGGAGCT
TCAAGTCGTGAGGCGGAGCCTGAATCTGTTCAGAACGCAGATGATGGACTTGGAGCTGGCCATGCTGCGG
CAGCAAACCGTGGTGTACCCTCATATGACAGAGGAGGACAGGTATGAAGTTGATCAGCTGCAGGGTTTGC
GGAACTCTGTCCGAATGGAACTGCAGGACCTGGAGATGCAGCTGGAGGAGCGCTTGCTGGGCCTGGATGA
GCAGCTCCGTGCAGTGCGGGTGCCATCACCTTTCCGCCCCTCTGCACTCCCGGGGATGTGTGGCAGCAGG
AGCGTAGATAACTTATCATGCCCGTCTCCACTGAACGTCATGGAGCCCGTCACAGAGCTAATTCGGGAGC
AATCATACCTGAAGTCTGAGCTGGGCCTGGGCCTTGGAGACATGGCGTATGAAATTCCTCCTGGAGAGAG
CTCGGAGTCCGTTTTCTCTCAAGCCACATCAGAGTCATCTTCCGTCTGCTCCAGCCCCTCCCACACCAAC
AGAAGATCTAGAGGGCTACCTGGGAGCAAACCCAGAGCCCGCTTAGTGGCGAGAAAGAAGATATTCCGAG
CCTCTGTGGCCCTGACACCAACTGCCCCCTCTAGAACAGGCTCTGTGCAAACACCTCCAGATCTGGAGAG
TTCCGAAGAAGCTGGAGGAGCTGAGGAAGCATCCCCGGTAGTGGGGCTTGCATCTCACGTGGAGGAAGAG
CCAGAGGATCTCTCACTGATGCCAGCAGCCGAGGAGATGCACAGGAATGTGGAGCAAGATGAACTGCAGC
AAGTCATCCGAGAGATTAAAGAGTCTATTGTTGGGGAAATTCGACGAGAAATTGTAAGTGGACTTTTGGC
AGCAGTGTCTTCAAGTAAAGCACCTGGTCCTAAGCAGGACAGCCACTGA

Translation (1252 aa):
MNRPLSAEAEEELEWQVASRRRKAWAKCRSSWQASETEDLSTETTTQDEDEDDEEDLPGTKLPAPAGRGN
VPNEKIAIWLKDCRTPLGASLDEQSSGTPKGVLVRNGGSFEDDLSLGAEANHLHEPDAQVENCNNILAKE
RRLQFHQKGRSMNSTGSGKSSGTVSSVSELLELYEEDPEEILYNLGFGRDEPDIASKIPSRFFNSSSFAR
GIDIKVFLSAQMQRMEVENPNYALTSRFRQIEVLTTVANAFSSLYSQVSGTPLQRIGSMSSVTSTKEVAD
SPPPLTRSNTANRLMKTLSKLNLCVDKTEKGEGGSSPATEKGRTLSISLSEDGGGGKSDPKLQKVVKKKE
SSSMLATVTEEVSGSSSTVTDSVDADRLSEEADSTISHQEESEESREAHSQEKDPLRKSAVTDPDLGHDG
RVSSHCELESSSELKSAQASSSEKEPCAPLTIPSIRNIMTQQKDSFEMEEVQSTEGEAPHVPATCQLSLA
KSKRDHLLRTASQHSDSSGFAEDSTDCVSLNHLLVNESLQAMGSSADSCDSETTVTSLGEDHVTPTAQDQ
PYFNESEEESLAPLQKGRAKVEIVAEKRKADNQDFPQCVTAENAGNNESTKGPCEPGHQITETGEHPPLA
ATGELPREESVESDVEKGSECEFAQYTTHHILRSLASFEAQGSGMSSEKKTGFPSSVDRVNTALQRAQMK
VCSMSGQRVGRSLIKSKDLLKQRYLLAKAGYPLRRSQSLPTTLLSPVRVVSSVNVRLSPGKETRCSPPSF
TYKYTPEEEQDLEKQGTEHDGQSLVKSTIFIPPPSVKKEEAPQSEGTRLEECHHGRLAPCPQFAPISQST
CSLHSVHSEWQDRPLCEHMRTLSAHSVPNISGAACSAFSPFGCPYSHRHAAHPYRACSVNPPSAIEMQLR
RVLHDIRSSLQNLSQYPMTRGPDLAAAPYSTQNSSVLPLYENTFQELQVVRRSLNLFRTQMMDLELAMLR
QQTVVYPHMTEEDRYEVDQLQGLRNSVRMELQDLEMQLEERLLGLDEQLRAVRVPSPFRPSALPGMCGSR
SVDNLSCPSPLNVMEPVTELIREQSYLKSELGLGLGDMAYEIPPGESSESVFSQATSESSSVCSSPSHTN
RRSRGLPGSKPRARLVARKKIFRASVALTPTAPSRTGSVQTPPDLESSEEAGGAEEASPVVGLASHVEEE
PEDLSLMPAAEEMHRNVEQDELQQVIREIKESIVGEIRREIVSGLLAAVSSSKAPGPKQDSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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