NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16183.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16183.1 Public Mus musculus 2 Zswim2 23 108 98 CCDS HistoryNCBI Gene:71861Re-query CCDS DB by CCDS ID:16183.1Re-query CCDS DB by GeneID:71861See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16183.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038223.7 ENSMUSP00000044913.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038223.7Link to Ensembl Protein Viewer:ENSMUSP00000044913.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000038223Re-query CCDS DB by Protein ID:ENSMUSP00000044913
Original member NCBI NM_027964.2 NP_082240.1 Updated not alive Link to Nucleotide Sequence:NM_027964.2Link to Protein Sequence:NP_082240.1Re-query CCDS DB by Nucleotide ID:NM_027964Re-query CCDS DB by Protein ID:NP_082240
Current member NCBI NM_027964.3 NP_082240.1 Accepted alive Link to Nucleotide Sequence:NM_027964.3Link to Protein Sequence:NP_082240.1Re-query CCDS DB by Nucleotide ID:NM_027964Re-query CCDS DB by Protein ID:NP_082240Link to BLAST:NP_082240.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082240.1 631 Q9D9X6 631 100% 0 0

Chromosomal Locations for CCDS 16183.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 83915197 83915997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83916845 83916998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83917894 83918003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83920663 83920747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83923569 83923820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83925062 83925272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83938733 83938773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83939627 83939703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83941014 83941178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGCTTCGCGGAGGCTGTAAAGCCTCAGAAAAGCGAAGACACTTAAGCGAGAGCCTCAGCTGGCAGCAAG
ACCAGGCGCTGAGTAGCAGCATCTATCTCCTGCGACAGATCGGCCCCACAGGCTTCCTACTGAAGGAGGA
GGAGCCAGAAAAGGGGGATTTCCGAGTTTTGCTTGGAAACCCACATGAGTGCAGCTGCCCCACGTTTCTG
AAGAGGGGGGAACTGTGCAAGCACATATGCTGGGTGTTATTGAAAAAATTCAAGCTTCCAAGGAATCATG
AATCTGCTTTTCAGTTGGGTCTTACCGAAGGAGAAATAAATGACTTGCTCCGGGGGATACATCAGGTCCA
AGCTCCACAGCTTAGAGCAAGTGATGAGACTGCACAGGTGGAAGAAGACGGCTACCTTAAGCAGAAGGAC
ATCAATGCAGGGGATATCTGTCCTATTTGTCAAGAAGTGCTGCTGGAGAAAAAACTCCCTGTCACCTTCT
GCAGATTTGGTTGTGGCAATAATGTTCACATAAAATGCATGCGGATCTTGGCTAACTACCAAGACACAGG
GTCTGACAGTTCCGTGTTAAGATGTCCGCTGTGCAGAGAAGAGTTTGCACCACTAAAAGTTATCTTGGAG
GAGTTCAAAAACTCTAACAAACTCATAACTATATCTGAGAAAGAACGACTGGACAAACACCTCGGAATTC
CCTGTAATAACTGTAACCAACTGCCAATCGAGGGGAGGTGCTACAAGTGTACTGAGTGTGTGGAGTACCA
CTTATGCCAGGAGTGCTTTGACAGCTGCTGTCACTCTTCCCATGCCTTTGCGTCCCGTGAGAAAAGAAAC
CAAAGATGGAGATCAGTAGAAAAAAGATCAGAAGTCATGAAATATTTAAATACTGAAAATGAGGGTGAAG
CAAAGCCGGGATGTTTTCAAGAAAAGCAGGGTCAGTTTTACACACCGAAGCATGTTGTAAAGTCTCTGCC
TCTCCTGATGATTACAAAGAAGAGCAAGCTGCTGGCCCCAGGGTACCAGTGTCGACTTTGCTTGAAATCA
TTTTCTTTTGGTCAATATACAAGACTGCTACCATGTACTCACAAGTTTCACAGGAAATGTATTGACAATT
GGTTACTCCACAAGTGCAATTCATGCCCGATTGACAGACAAGTCATATATAACCCTCTGATCTGGAAAGG
CATAGCCACGGATGGACAAGCACATCAGTTGGCTTCAAGCAAAGATATCGCCTGTCTGTCGAAGCAGCAA
GAGCCAAAACTTTTTATTCCTGGTACTGGATTAGTTTTAAAAGGAAAGAGAATGGGGGTTTTACCTAGCA
TTCCCCAGTATAATTCTAAAGTATTGACTACACTTCAAAATCCATCAGACAACTATCAGAATATAACAAT
GGACGACCTATGCTCAGTCAAATTAGATAATTCAAATTCCAGAAAATTAGTTTTTGGATATAAAATTAGC
AAACAGTTCCCCACATATCTGAAAAATCCAACCACTGGGCAAACACCATCTCAAACATTTCTTCCTTCCC
TTCCTCATAAGAACATTATTTGTCTCACTGGAAGGGAAAGCCCACATATCTATGAAAAAGATCATATTGG
TCAGAGTCAAAAGACAAGCAGAGGTTACGAACATATAAACTATAACACAAGGAAATCTCTTGGTTCTAGA
TTAAGACAACACAAGAGATCAAGTGCATTATCTTCAGAAGATTTAAATCTTACTATCAACTTGGGTACAA
CCAAACTTAGTTTGTCTAAGAGGCAAAATAATTCCATGGGGAAAGTTAGACAAAAACTTGGTCATCCACC
CAGACGACCTGCGTATCCCCCTTTACAAACACAAAATGCTGCTCTGTCTTTAATAATGCAAGGAATTCAA
CTCTGA

Translation (631 aa):
MLRGGCKASEKRRHLSESLSWQQDQALSSSIYLLRQIGPTGFLLKEEEPEKGDFRVLLGNPHECSCPTFL
KRGELCKHICWVLLKKFKLPRNHESAFQLGLTEGEINDLLRGIHQVQAPQLRASDETAQVEEDGYLKQKD
INAGDICPICQEVLLEKKLPVTFCRFGCGNNVHIKCMRILANYQDTGSDSSVLRCPLCREEFAPLKVILE
EFKNSNKLITISEKERLDKHLGIPCNNCNQLPIEGRCYKCTECVEYHLCQECFDSCCHSSHAFASREKRN
QRWRSVEKRSEVMKYLNTENEGEAKPGCFQEKQGQFYTPKHVVKSLPLLMITKKSKLLAPGYQCRLCLKS
FSFGQYTRLLPCTHKFHRKCIDNWLLHKCNSCPIDRQVIYNPLIWKGIATDGQAHQLASSKDIACLSKQQ
EPKLFIPGTGLVLKGKRMGVLPSIPQYNSKVLTTLQNPSDNYQNITMDDLCSVKLDNSNSRKLVFGYKIS
KQFPTYLKNPTTGQTPSQTFLPSLPHKNIICLTGRESPHIYEKDHIGQSQKTSRGYEHINYNTRKSLGSR
LRQHKRSSALSSEDLNLTINLGTTKLSLSKRQNNSMGKVRQKLGHPPRRPAYPPLQTQNAALSLIMQGIQ
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH