NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16400.1 Public Mus musculus 2 Or4c126 23 108 98 CCDS HistoryNCBI Gene:258466Re-query CCDS DB by CCDS ID:16400.1Re-query CCDS DB by GeneID:258466See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16400.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077785.3 ENSMUSP00000076959.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077785.3Link to Ensembl Protein Viewer:ENSMUSP00000076959.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077785Re-query CCDS DB by Protein ID:ENSMUSP00000076959
Original member Current member EBI ENSMUST00000213909.2 ENSMUSP00000150341.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213909.2Link to Ensembl Protein Viewer:ENSMUSP00000150341.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000213909Re-query CCDS DB by Protein ID:ENSMUSP00000150341
Original member Current member EBI ENSMUST00000216953.2 ENSMUSP00000150711.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216953.2Link to Ensembl Protein Viewer:ENSMUSP00000150711.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000216953Re-query CCDS DB by Protein ID:ENSMUSP00000150711
Original member Current member NCBI NM_146474.1 NP_666685.1 Accepted alive Link to Nucleotide Sequence:NM_146474.1Link to Protein Sequence:NP_666685.1Re-query CCDS DB by Nucleotide ID:NM_146474Re-query CCDS DB by Protein ID:NP_666685Link to BLAST:NP_666685.1

Chromosomal Locations for CCDS 16400.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 89993395 89994315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGAGCAATGTCACAGAATTTATCCTCCTGGGCCTGACCCAAGACCCAGATCTGCAGAAATTCTTATTCA
TTGTGTGCTTAATAATCTATTTGATCACACTGGCTGGTAACATGCTCATCTCAGTCACCATCTTCATCAG
CCCAGCCCTGGCCACTCCCATGTACTTCTTTCTTTCCTACTTGTCCGTCATAGATGGTTTCTACTCTTCT
TCCATAGCACCCAAAATGATCTATGACCTAATCTCTGAGAAGAGCACCATATCCTTCAATGGCTGCATGA
CTCAGCTTTTTGTGGAGCATTTTTTTGCTGCAGCTGAAATCATCTTGCTGATGTCCATGGCCTATGATCG
CTATGTAGCCATCTGCAAGCCCTTGCACTACATGACCATCATGAACCGACCTCTGTGTGTATTCCTGGTG
GGGGCTGCTGTAATCTTAGGATTCATCCATGGAGGGATACAGATTTTGTTTATGGCCCAGTTACCATTCT
GTGGCCCAAATATCATTGATCACTTTATGTGTGATTTAATACCACTCCTGGAGTTGGCCTGCACTGACAC
TCACACTCTGGGACCCCTGATCGCTGCCAACAGCGGGTCACTGTGTTTACTCATTTTCTCTATGCTGGTT
GCTTCCTATGTGGTCATCCTTCGCTCCCTGAGAAATCACAGTGCAGAAGGGCGTCGCAAAGCCCTGTCTA
CCTGTGCCTCTCATGTCACCGTTGTTGTCTTATTCTTTGTTCCTTGTTCATACCTGTACCTAAGGCCCAT
GACCTCCTTCCCCACTGACAAAGCTGTAACTGTGTTTTGCACCCTAGTGACACCTATGCTGAACCCTCTG
ATCTATACCCTCAGAAATGAGGAAGTCAAAAGGGTTATGAAGAAGCTCTGGGGTCGAATGAGGAAAGCTG
GTGACATGTAA

Translation (306 aa):
MSNVTEFILLGLTQDPDLQKFLFIVCLIIYLITLAGNMLISVTIFISPALATPMYFFLSYLSVIDGFYSS
SIAPKMIYDLISEKSTISFNGCMTQLFVEHFFAAAEIILLMSMAYDRYVAICKPLHYMTIMNRPLCVFLV
GAAVILGFIHGGIQILFMAQLPFCGPNIIDHFMCDLIPLLELACTDTHTLGPLIAANSGSLCLLIFSMLV
ASYVVILRSLRNHSAEGRRKALSTCASHVTVVVLFFVPCSYLYLRPMTSFPTDKAVTVFCTLVTPMLNPL
IYTLRNEEVKRVMKKLWGRMRKAGDM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH