NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16629.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16629.1 Public Mus musculus 2 Tmem62 23 108 98 CCDS HistoryNCBI Gene:96957Re-query CCDS DB by CCDS ID:16629.1Re-query CCDS DB by GeneID:96957See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16629.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067582.13 ENSMUSP00000064310.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067582.13Link to Ensembl Protein Viewer:ENSMUSP00000064310.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067582Re-query CCDS DB by Protein ID:ENSMUSP00000064310
Original member NCBI NM_175285.3 NP_780494.1 Updated not alive Link to Nucleotide Sequence:NM_175285.3Link to Protein Sequence:NP_780494.1Re-query CCDS DB by Nucleotide ID:NM_175285Re-query CCDS DB by Protein ID:NP_780494
Current member NCBI NM_175285.4 NP_780494.1 Accepted alive Link to Nucleotide Sequence:NM_175285.4Link to Protein Sequence:NP_780494.1Re-query CCDS DB by Nucleotide ID:NM_175285Re-query CCDS DB by Protein ID:NP_780494Link to BLAST:NP_780494.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780494.1 643 Q8BXJ9 643 100% 0 0

Chromosomal Locations for CCDS 16629.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 120977299 120977478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120977699 120977810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120979131 120979268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120980473 120980518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120984334 120984475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120986583 120986707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120986836 120986958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120990331 120990486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120993478 120993637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120996406 120996519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120999074 120999158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121002497 121002601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121004682 121004800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121006819 121007145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1932 nt):
ATGGCGAGAATGCTGGCGGTCCGGGTGGTGGCAGGGCTGGCGGCGGCCGCGGTGGCCGCCCTGCTGTTGG
AGCACTACGGCCTGGCTGGGCCGACTACGCCGCTGCCGAAGCCCAGAGGCTCCCAGAGGCCGCACCCCGC
CCCGGGCTCGGAAGCCAACAACATCTTCTGGGGGCTGCAGATATCCGACATTCACCTGAGCAGATTTCAA
GATCCAGGCAGAGCGCTGGCCTTAGAGAAGTTCTGTTCGGAAACTATTGACATCATTCAACCGGCTCTTG
TCCTGGCCACTGGAGACCTGACAGATGCCAAAACAAAGGAACACTTGGGATCCAGACAACATGAAGTAGA
ATGGCAAACTTACCAGAGAATTCTGAAAAAGACAAGAGTCATGGAAAAAACCAAGTGGCTGGATATCAAA
GGAAATCATGATGCATATAACATCCCAAGTCTGGAGAGCATCGCCAATTATTACAGGAAGTACTCTGCTG
TGCGGAAGGACGGCGCTTTTCATCACATCCACAGCACTCCCTTTGGCAACTATTCCTTCATCTCTGTGGA
TGCCACCCAAAGGCCAGGGCCTAAGAGACCCTATAATTTCTTTGGCATTTTAGATGAGAAACAGATGGAG
GAACTCGTAGAGTTTTCCAAGAAAAGCAGTCAGAGCAACCAGACGATTTGGTTTGGCCACTTTACAACAT
CAACTATCATGTCTCCATCCCCAGGGATCCGGACAGTAATGGGTTCCGCTACAGCTTATCTGTGTGGGCA
CCTCCATACGCTTGGTGGGCTGATGCCTGTTCTGCACACCCGTCACTTCACAGGCACGCTGGAACTTGAG
GTGGGAGACTGGAAAGACAACAGAAGGTACCGGATCTTTGCCTTTGATCACGACCTCTTTAGCTTTGCAG
ATGTAACCTTTGACAAGTGGCCTGTGGTTCTCATCACCAATCCCAAATCCCTCCTCTATAGCTGTGCTAA
GCATGAGCCGCTAGAAAGGCTCTTCCATTCCACACACATAAGAGTATTGGCCTTTTCCTTATCCCCCATC
ACTTCTGTCACTGTTAAGATTGATGGAGGTGATATAGGCCAGGCTTCTCACTTGTCTGGTCCTATTTTCA
TACTGAAGTGGAACCCTAGAAACTACAGTAATGGGACACATACCATAGAAGTATTCGTCCAGGATTCTGC
TGGAAGAAGTAGGACTGCTCACCACATATTTTCTGCCCAAGAGGATGCTCATCTCACATTTGATCCTTTG
GCATCATTTATCCTCCTTACTGACCACTACATTGTGGCCCGGGTCCTGTTTGTGTTGATTGTGCTGATCC
AGCTCACCACACTGATTACATTCAGATATCTAGCATACCCAGAGCTTAAAGAACCTCTGGGATTTGCAAA
TATGACCACATTTTCCCTTCATATCTTGAGCAAAATAAACATCTCCTACTATTCTGTTTTGTTGTTGACC
TTGTATACAGTGCTGGGACCATGGTTTGTTGGTGAGATAATTGATGGCAAATTGGGTTGCTGCTTTTCAT
TTGGGATATTTGTTGATGGACATTTCCTGCAAGGTGGTCTAACATTTATAAATGGAATTATACAGCTGGT
GTTCTTTAACATCCCCTTGATGGCTTACGTATGCTGGAGTTTGCTACATCGCTGCTTTGGTCACAGCTTC
AGGTCTCATCTCCACCAGGGAAAATACTGGAAGATTATACCTGTTTACCTACTTATACTTCTACTGTACA
TATGGCAGGTTTATTCTTGCTACTTTCTTCATGTGACATATGGCTCCCTAGCCTTTACATTCTCTCCATT
GAGGACCTGGTTGACATTGCTGACACCTGTGCTCATTTACCGTGTGTGGACATTGAACTCCACTGAACTT
GGAATATTCATGGTGCAGTTAAAAAGTCATCTGAGCTCCTGA

Translation (643 aa):
MARMLAVRVVAGLAAAAVAALLLEHYGLAGPTTPLPKPRGSQRPHPAPGSEANNIFWGLQISDIHLSRFQ
DPGRALALEKFCSETIDIIQPALVLATGDLTDAKTKEHLGSRQHEVEWQTYQRILKKTRVMEKTKWLDIK
GNHDAYNIPSLESIANYYRKYSAVRKDGAFHHIHSTPFGNYSFISVDATQRPGPKRPYNFFGILDEKQME
ELVEFSKKSSQSNQTIWFGHFTTSTIMSPSPGIRTVMGSATAYLCGHLHTLGGLMPVLHTRHFTGTLELE
VGDWKDNRRYRIFAFDHDLFSFADVTFDKWPVVLITNPKSLLYSCAKHEPLERLFHSTHIRVLAFSLSPI
TSVTVKIDGGDIGQASHLSGPIFILKWNPRNYSNGTHTIEVFVQDSAGRSRTAHHIFSAQEDAHLTFDPL
ASFILLTDHYIVARVLFVLIVLIQLTTLITFRYLAYPELKEPLGFANMTTFSLHILSKINISYYSVLLLT
LYTVLGPWFVGEIIDGKLGCCFSFGIFVDGHFLQGGLTFINGIIQLVFFNIPLMAYVCWSLLHRCFGHSF
RSHLHQGKYWKIIPVYLLILLLYIWQVYSCYFLHVTYGSLAFTFSPLRTWLTLLTPVLIYRVWTLNSTEL
GIFMVQLKSHLSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH